Aspergillus nidulans gene loci: Q,R

Gene symbols given in parenthesis after the standard one are alternatives or obsolete.
Symbols of extranuclear genes are given in square brackets.
Linkage groups in parenthesis () have been determined by haploidization, but the marker has not been located meiotically. {} indicates location by hybridisation or BLAST searching.
Autocalled gene numbers in curly brackets {} indicate identification only by homology and map position/synteny.

KEY
def.= deficiency; inhib.= inhibited; regl.= regulation; req.= requiring; res.= resistant; sup.= suppressor; upt.= uptake; ut.= utilization; deH = dehydrogenase
# = mutant strains available from Glasgow or Fungal Genetics Stock Centre

References.... Other genes.... Maps.... Maps home page

Gene
Linkage gp.
Phenotype, enzymes etc.
References
GenBank/
(Ok) EST
Closest
autocalled
gene
qutA (qua)
VIII
Quinate ut. activator, zinc binuclear cluster transcription factor
106, 264, 284
X06252
AN1134.3
qutB
VIII
Quinate ut. quinate 5-dehydrogenase
284, 286
X13525
AN1137.3
qutC
VIII
Quinate ut. dehydroshikimate dehydratase
284, 380
M77665
AN1140.3
qutD
VIII
Quinate ut. permease
286, 710
X13525
AN1138.3
qutE
VIII
Quinate ut. 3-dehydroquinase
108, 286
X13525
X04696
AN1135.3
qutG
VIII
Quinate cluster, phosphatase
108, 286
X13525
AN1136.3
qutH
VIII
Protocatechuate ut. regl.
380
M77665
AN1139.3
qutR
VIII
Quinate ut. repressor
264, 290
M59935
M77664
AN1132.3
rA #
I
Diazonium colour conversion
216

rB
II
Diazonium colour conversion
222

rC
VIII
Diazonium colour conversion
222

rD (=rA?)
I
Diazonium colour conversion
142

rE
(VII)
Diazonium colour conversion
142

racA
{III}
Rac1 homologue, hyphal polarity
1186

AN4743.3
radA = uvsC

605

radB = uvsJ
III

radC (musR?)
{III}
Rad52 homologue, mutagen sensitivity
847
AY032591
AN4407.3
rad50 (sldI?)

Rad50 homologue, mutagen sensitivity
1045

ram1
{VII}
Mating factor modification, CaaX farnesyltransferase beta subunit
1006
BK001300
AN2002.3
ram2
{II}
Mating factor modification, CaaX farnesyltransferase alpha subunit
1006
BK001299
AN3867.3
ranA
{V}
Nuclear transport: small GTPase, essential
1117
AY436706
AN5482.3
ranGAP
{III}
Ran-GTPase activating protein, essential
1061, 1117

AN4862.3
rasA
(A-ras)
{VIII}
Signal transduction, germination and growth
818
U03023
U03025
AN0182.3
rasB
{I}
Signal transduction; conidiation
994

AN5832.3
ras-GAP see gapA

rbpE
{VIII}
RNA polymerase subunit
-
AF236666
AN0752.3
rcaA (scaA)
{VI}
Camptothecin resistance conferring protein
761
AF228504
AN3372.3
rcc1 (An-rcc1)
{IV}
Essential, chromatin-associated S. cerevisiae srm1-rcc1 homologue
1117

AN6978.3
rce1
{I}
Mating factor C-terminal processing CaaX protease
1006
BK001297
AN6528.3
rcoA (tupA)
{I}
WD40 repeat protein, tup1p, RCO1 homologue; brlA, aflR regulation, sexual reproduction
859, 1144
AF197225 EU522669
AN6505.3
rec #
-
Low mitotic recombination
490

recQ (orqA)
{III}
Helicase with RecQ homology
303, 871
AJ271844, AF368289
AN4432.3
revA
{VII}
Rev7-like protein

DQ185032
AN2163.4
rfeA
{VI
Putative transcription factor, homology to regulator of FLO11
-
AF467709
AN2943.3
rfeB
{VII
Putative homeobox transcription factor, homology to regulator of FLO11
-
AF467710
AN2009.3
rfeC
{I}
Putative zinc finger transcription factor, regulator of FLO11
-
AF467711
AN5966.3
rfeD
{VII}
Putative transcription factor, regulator of FLO11
-
AF467712
AN2113.3
rfeE
{VIII}
Putative transcription factor, regulator of FLO11
-
AF467713
AN0976.3
rfeF
{VII}
Putative transcription factor, regulator of FLO11
-
AF467714
AN2012.3
rfeG
{III}
Putative transcription factor, regulator of FLO11
-
AF467715
AN4680.3
rgsA
{V}
Regulator of G-protein ganA/sfaD/gpgA signalling, cAMP/PKA carbon-sensing pathway
1001, 1116

AN5755.3
rgsB
{II}
Regulator of G-protein signalling
1001

AN3622.3
rgsC
{VIII}
Regulator of G-protein signalling, similar to mdm1 intermediate filament protein
1001

AN1377.3
rhiA (= benA)
VIII
Rhizoxin res.
648

rhiB
(II)
Rhizoxin res.
648

rhoA
{V}
Rho GTPase homologue
259, 993
AF338871
AN5740.3
rhoC
{VI}
Rho GTPase homologue
259
AF379682
AN2687.3
riboA (ribo1, rinB) #
I
Riboflavin req.
186, 546

riboB (ribo2, rinA) #
VIII
Riboflavin req. GTP cyclohydrolase
186, 332, 474, 1098

AN0670.3
riboC (ribo3)#
(V)
Riboflavin req.
546

riboD (ribo5)#
V
Riboflavin req. for nitrate ut.
186, 546

riboE (ribo6)#
II
Riboflavin req. Probably riboflavin synthase B/alpha chain
332, 546

{AN4231.3}
riboF (ribo8)#
(I)
Riboflavin req.
210

riboG (rinC)
V
Riboflavin req. for nitrate ut. Probably riboflavin (lumazine) synthase, A/beta chain
186

{AN10718.3}
rin see ribo

rlmA
{VI}
Cell integrity. MADS-box transcription factor, Saccharomyces cerevisiae rlm1 homologue
1154
AB110208
AN2984.3
rmtA
{II}
Histone arginine methyltransferse
1043
AY272042
AN10526.3
rmtB
{VI}
Histone arginine methyltransferse
1043
AY375304
AN3096.3
rmtC
{VIII}
Histone arginine methyltransferse
1043
AY375305
AN0134.3
rnrA
{VIII}
Ribonucleotide reductase, small subunit
804
AF310625
AN0067.3
rnsA
{III}
Ribonucleotide reductase, large subunit
1095

{AN4380.3}
rodA
III
Rodletless conidial surface
642
M61113
AN8803.3
rosA
{V}
Repressor of sexual development
1066
AJ519682
AN5170.3
RP (AnRP)
?
Xylanase regulator
968

RPB1
{VIII}
DNA-dependent RNA polymerase II, largest subunit
984
AB077091
AN0809.3
RPB2
{VI}
DNA-dependent RNA polymerase II subunit(not Glasgow strain)
946
AF107793
AN9120.3
rpdA
{III}
Histone deacetylase (reduced potassium dependence)
265
AF163862
AN4493.3
rpl16a
{II}
Ribosomal protein L16a
921
AF178537
AN4202.3
rpl3
{I}
Ribosomal protein L3
920
AF198447
AN6202.3
rpl37
{III}
Ribosomal protein L37
920
AF277381, AF277382
AN4787.3
rpmA
{IV}
Mitochondrial RNA polymerase

AJ544577
AN7609.3
rps16
{II}
Ribosomal protein s16
124
M65259
AN4060.3
rrmA (csxA)
{VI}
Putative RNA binding protein, post-transcriptional regulation
1181
DQ066726
AN9090.3
rrpB
{III}
RNA-dependent RNA polymerase, RNA silencing
1044

AN4790.3
rrpC
{VI}
RNA-dependent RNA polymerase, RNA silencing
1044

AN2717.3
rsdA
{VII}
Argonaut protein; Paz and Piwi-domain proteins, RNA silencing
1044

AN1519.3

References.... Other genes.... Maps.... Maps home page

Gene	Linkage gp.	Phenotype, enzymes etc.	References	GenBank/ (Ok) EST	Closest autocalled gene
qutA (qua)	VIII	Quinate ut. activator, zinc binuclear cluster transcription factor	106, 264, 284	X06252	AN1134.3
qutB	VIII	Quinate ut. quinate 5-dehydrogenase	284, 286	X13525	AN1137.3
qutC	VIII	Quinate ut. dehydroshikimate dehydratase	284, 380	M77665	AN1140.3
qutD	VIII	Quinate ut. permease	286, 710	X13525	AN1138.3
qutE	VIII	Quinate ut. 3-dehydroquinase	108, 286	X13525 X04696	AN1135.3
qutG	VIII	Quinate cluster, phosphatase	108, 286	X13525	AN1136.3
qutH	VIII	Protocatechuate ut. regl.	380	M77665	AN1139.3
qutR	VIII	Quinate ut. repressor	264, 290	M59935 M77664	AN1132.3
rA #	I	Diazonium colour conversion	216
rB	II	Diazonium colour conversion	222
rC	VIII	Diazonium colour conversion	222
rD (=rA?)	I	Diazonium colour conversion	142
rE	(VII)	Diazonium colour conversion	142
racA	{III}	Rac1 homologue, hyphal polarity	1186		AN4743.3
radA = uvsC			605
radB = uvsJ	III
radC (musR?)	{III}	Rad52 homologue, mutagen sensitivity	847	AY032591	AN4407.3
rad50 (sldI?)		Rad50 homologue, mutagen sensitivity	1045
ram1	{VII}	Mating factor modification, CaaX farnesyltransferase beta subunit	1006	BK001300	AN2002.3
ram2	{II}	Mating factor modification, CaaX farnesyltransferase alpha subunit	1006	BK001299	AN3867.3
ranA	{V}	Nuclear transport: small GTPase, essential	1117	AY436706	AN5482.3
ranGAP	{III}	Ran-GTPase activating protein, essential	1061, 1117		AN4862.3
rasA (A-ras)	{VIII}	Signal transduction, germination and growth	818	U03023 U03025	AN0182.3
rasB	{I}	Signal transduction; conidiation	994		AN5832.3
ras-GAP see gapA
rbpE	{VIII}	RNA polymerase subunit	-	AF236666	AN0752.3
rcaA (scaA)	{VI}	Camptothecin resistance conferring protein	761	AF228504	AN3372.3
rcc1 (An-rcc1)	{IV}	Essential, chromatin-associated S. cerevisiae srm1-rcc1 homologue	1117		AN6978.3
rce1	{I}	Mating factor C-terminal processing CaaX protease	1006	BK001297	AN6528.3
rcoA (tupA)	{I}	WD40 repeat protein, tup1p, RCO1 homologue; brlA, aflR regulation, sexual reproduction	859, 1144	AF197225 EU522669	AN6505.3
rec #	-	Low mitotic recombination	490
recQ (orqA)	{III}	Helicase with RecQ homology	303, 871	AJ271844, AF368289	AN4432.3
revA	{VII}	Rev7-like protein		DQ185032	AN2163.4
rfeA	{VI	Putative transcription factor, homology to regulator of FLO11	-	AF467709	AN2943.3
rfeB	{VII	Putative homeobox transcription factor, homology to regulator of FLO11	-	AF467710	AN2009.3
rfeC	{I}	Putative zinc finger transcription factor, regulator of FLO11	-	AF467711	AN5966.3
rfeD	{VII}	Putative transcription factor, regulator of FLO11	-	AF467712	AN2113.3
rfeE	{VIII}	Putative transcription factor, regulator of FLO11	-	AF467713	AN0976.3
rfeF	{VII}	Putative transcription factor, regulator of FLO11	-	AF467714	AN2012.3
rfeG	{III}	Putative transcription factor, regulator of FLO11	-	AF467715	AN4680.3
rgsA	{V}	Regulator of G-protein ganA/sfaD/gpgA signalling, cAMP/PKA carbon-sensing pathway	1001, 1116		AN5755.3
rgsB	{II}	Regulator of G-protein signalling	1001		AN3622.3
rgsC	{VIII}	Regulator of G-protein signalling, similar to mdm1 intermediate filament protein	1001		AN1377.3
rhiA (= benA)	VIII	Rhizoxin res.	648
rhiB	(II)	Rhizoxin res.	648
rhoA	{V}	Rho GTPase homologue	259, 993	AF338871	AN5740.3
rhoC	{VI}	Rho GTPase homologue	259	AF379682	AN2687.3
riboA (ribo1, rinB) #	I	Riboflavin req.	186, 546
riboB (ribo2, rinA) #	VIII	Riboflavin req. GTP cyclohydrolase	186, 332, 474, 1098		AN0670.3
riboC (ribo3)#	(V)	Riboflavin req.	546
riboD (ribo5)#	V	Riboflavin req. for nitrate ut.	186, 546
riboE (ribo6)#	II	Riboflavin req. Probably riboflavin synthase B/alpha chain	332, 546		{AN4231.3}
riboF (ribo8)#	(I)	Riboflavin req.	210
riboG (rinC)	V	Riboflavin req. for nitrate ut. Probably riboflavin (lumazine) synthase, A/beta chain	186		{AN10718.3}
rin see ribo
rlmA	{VI}	Cell integrity. MADS-box transcription factor, Saccharomyces cerevisiae rlm1 homologue	1154	AB110208	AN2984.3
rmtA	{II}	Histone arginine methyltransferse	1043	AY272042	AN10526.3
rmtB	{VI}	Histone arginine methyltransferse	1043	AY375304	AN3096.3
rmtC	{VIII}	Histone arginine methyltransferse	1043	AY375305	AN0134.3
rnrA	{VIII}	Ribonucleotide reductase, small subunit	804	AF310625	AN0067.3
rnsA	{III}	Ribonucleotide reductase, large subunit	1095		{AN4380.3}
rodA	III	Rodletless conidial surface	642	M61113	AN8803.3
rosA	{V}	Repressor of sexual development	1066	AJ519682	AN5170.3
RP (AnRP)	?	Xylanase regulator	968
RPB1	{VIII}	DNA-dependent RNA polymerase II, largest subunit	984	AB077091	AN0809.3
RPB2	{VI}	DNA-dependent RNA polymerase II subunit(not Glasgow strain)	946	AF107793	AN9120.3
rpdA	{III}	Histone deacetylase (reduced potassium dependence)	265	AF163862	AN4493.3
rpl16a	{II}	Ribosomal protein L16a	921	AF178537	AN4202.3
rpl3	{I}	Ribosomal protein L3	920	AF198447	AN6202.3
rpl37	{III}	Ribosomal protein L37	920	AF277381, AF277382	AN4787.3
rpmA	{IV}	Mitochondrial RNA polymerase		AJ544577	AN7609.3
rps16	{II}	Ribosomal protein s16	124	M65259	AN4060.3
rrmA (csxA)	{VI}	Putative RNA binding protein, post-transcriptional regulation	1181	DQ066726	AN9090.3
rrpB	{III}	RNA-dependent RNA polymerase, RNA silencing	1044		AN4790.3
rrpC	{VI}	RNA-dependent RNA polymerase, RNA silencing	1044		AN2717.3
rsdA	{VII}	Argonaut protein; Paz and Piwi-domain proteins, RNA silencing	1044		AN1519.3