Genes in Contigs: Chromosome V

Column 2 shows contigs, including gaps and overlaps, ordered by chromosome arm. The orientations of previously unattached contigs are shown relative to the supercontigs in which they are now incorporated; for details see Revised supercontig list, telomere locations. In columns 4 and 5, genes named in publications or GenBank entries are listed according to the position of the most closely corresponding autocalled gene.

Genes represented on the linkage map are shown in bold

Genomic data from The Broad Institute (http://www.broad.mit.edu/annotation/fungi/aspergillus/)

Notes
The methods of Li et al. (se refs. 1088, 1200) lead to the conclusion that supercontig 6 has been mis-assembled, since contig 216, which ends in telomere T1, overlaps contig 91, and this combination is a better fit to the end of chromosome VIII-L.
The linkage map for this chromosome supports splitting of supercontig 6 into two fragments 6a and 6b, separated by the nucleolus organizer, a fragment of which is seen at the end of contig 90, but is not otherwise represented in the Broad Institute genome.
The placing of contig 226 at the end of V-R is hypothetical: contigs 89-90 show multiple links to a TC11-type TelContig and are therefore shown here linked to contig 226, carrying the only remaining unlocated copy of that sequence.

Links:
Chromosome V linkage map.... Linkage data for chromosome V
Other maps and data.... Gene lists.... References.... Maps home page

Chromosome	Contig	Supercontig	Gene/element	Autocalled gene (or position)
VL	-	12	Telomere T8	-
VL	146	12	-	-
VL	147	12	-	-
VL	148	12	-	-
VL	149	12	-	-
VL	150	12	phiA	AN8333.3
VL	151	12	fkbB	AN8343.4
VL	151	12	gprI	(22608-21448)
VL	212 +	12	-	-
VL	152	12	-	-
VL	153	12	apdB	AN8408.3
VL	153	12	apdC	AN8409.3
VL	153	12	apdD	AN8410.3
VL	153	12	apdE	AN8411.3
VL	153	12	apdA	AN8412.3
VL	153	12	apdF	AN8413.3
VL	153	12	apdR	AN8414.3
VL	153	12	apdG	AN8415.3
VL	153	12	binC	AN8430.3
VL	153	12	atrB	AN8489.3
VL	196 -	12	-	-
VL	154	12	tdiA	AN8513.3
VL	154	12	tdiB	AN8514.3
VL	154	12	tdiC	AN8515.3
VL	154	12	tdiD	AN8516.3
VL	154	12	tdiE	AN8517.3
VL	156	12	azgA	AN8534.3
VL	157	12	mirB	AN8540.3
VL	157	12	cysA	AN8565.3
Nucleolus organizer
V	90	6a	18S rRNA gene and spacers	(2174-3326)
V	89	6a	acpA	AN5226.3
V	89	6a	sndB	AN5225.3
V	89	6a	pkiA	AN5210.3
V	89	6a	lysB	AN5206.3
V	89	6a	nudC	AN5181.3
V	89	6a	cbhA	AN5176.3
V	89	6a	rosA	AN5170.3
V	89	6a	uvsD	AN5165.3
V	89	6a	pdhB	AN5162.3
V	88	6a	pho80	AN5156.3
V	88	6a	sepB	AN10635.3
V	88	6a	ahbB	AN10647.3
V	88	6a	gltA	AN5134.3
V	88	6a	aifA	AN5131.3
V	88	6a	pmtA	AN5105.3
V	88	6a	cdc68	AN5102.3
V	87	6a	-	-
Centromere
VR	98	6b	gfaA	AN10709.3
VR	98	6b	riboG?	AN10718.3
VR	98	6b	ppgA	AN5791.3
VR	98	6b	mnrA	AN10710.3
VR	98	6b	rgsA	AN5755.3
VR	98	6b	acuN	AN5746.3
VR	98	6b	rhoA	AN5740.3
VR	98	6b	crzA	AN5726.4
VR	98	6b	cctA	AN5713.3
VR	98	6b	casA	AN5712.3
VR	98	6b	aroF	AN5701.3
VR	98	6b	"magmas-like"	AN5693.3
VR	98	6b	mpkA	AN5666.3
VR	98	6b	treB	AN5635.3
VR	98	6b	acuD	AN5634.3
VR	98	6b	sonB	AN5627.3
VR	98	6b	facA	AN5626.3
VR	98	6b	hxA	AN5613.3
VR	195 +	6b	-	-
VR	97	6b	acuG	AN5604.3
VR	199 +	6b	-	-
VR	96	6b	lysE	AN5601.3
VR	96	6b	glcA	AN5589.3
VR	96	6b	sodB = sod1	AN5577.3
VR	95	6b	gldB	AN5563.3
VR	95	6b	prtA	AN5558.3
VR	94	6b	cotA	AN5529.3
VR	94	6b	acoA (aconitase)	AN5525.3
VR	94	6b	tpsA	AN5523.3
VR	94	6b	alpA	AN5521.3
VR	94	6b	chkA	AN5494.3
VR	94	6b	ranA	AN5482.3
VR	94	6b	noxA	AN5457.3
VR	94	6b	csuA	AN5449.3
VR	94	6b	cpyA	AN5442.3
VR	94	6b	tutD?	AN5426.3
VR	94	6b	top2	AN5406.3
VR	94	6b	lccC	AN5397.3
VR	93	6b	acuH	AN5356.3
VR	93	6b	uvsJ	AN5344.3
VR	93	6b	kinA	AN5343.3
VR	93	6b	tcsA	AN5296.3
VR	93	6b	maoA	AN5276.3
VR	93	6b	hlyA	AN5273.3
VR	210 -	6b	-	-
VR	92	6b	epoxide hydrolase	AN5262.3
VR	226 +		Telomere T15	-

Chromosome V linkage map.... Linkage data for chromosome V
Other maps and data.... Gene lists.... References.... Maps home page