Genes in Contigs: Chromosome VI

Column 2 shows contigs, including gaps and overlaps, ordered by chromosome arm. The orientations of previously unattached contigs are shown relative to the supercontigs in which they are now incorporated; for details see Revised supercontig list, telomere locations. In columns 4 and 5, genes named in publications or GenBank entries are listed according to the position of the most closely corresponding autocalled gene.

Genes represented on the linkage map are shown in bold

Genomic data from The Broad Institute (http://www.broad.mit.edu/annotation/fungi/aspergillus/)
Telomere positions from Li, W., Rehmeyer, C.J., Staben, C. & Farman, M.L. (ref 1088).

Links:
Chromosome VI linkage map.... Linkage data for chromosome VI
Other maps and data.... Gene lists.... References.... Maps home page

Chromosome	Contig	Supercontig	Gene or element	Autocalled gene (or position)
VIL	170	15	Telomere T3	-
VIL	170	15	gprE	AN9199.3
VIL	170	15	suApacA	AN9186.3
VIL	170	15	lccB	AN9170.3
VIL	206 +	15	-	-
VIL	169	15	ugpA	AN9148.4
VIL	169	15	cnxG	AN9143.3
VIL	169	15	Rhamnogalacturonase	AN9134.3
VIL	169	15	esdC	AN9121.3
VIL	169	15	RPB2	AN9120.3
VIL	169	15	tinA	AN11166.3
VIL	169	15	atgA	AN9103.3
VIL	169	15	ungA	AN9094.4
VIL	169	15	rrmA	AN9090.3
VIL	169	15	oefA	AN9087.3
VIL	169	15	tinC	AN9067.3
VI	-	Centromere
VIR	58	3	Histone H2B	AN3469.3
VIR	58	3	Histone H2A	AN3468.3
VIR	58	3	metB	AN3456.3
VIR	58	3	pom152	AN3454.3
VIR	57	3	orlA	AN3441.3
VIR	57	3	apsB	AN3437.3
VIR	57	3	lreA	AN3436.3
VIR	56	3	(lreA)	AN3435.3 (truncated copy of AN3436.3) in 56-57 overlap.
VIR	55	3	eglB	AN3418.3
VIR	55	3	sgdD	AN3417.3
VIR	55	3	amyB	AN3402.3
VIR	55	3	pepI	AN3393.3
VIR	55	3	amyF	AN3388.3
VIR	55	3	gprD	AN3387.3
VIR	55	3	salA	AN3382.3
VIR	55	3	fasC	AN3381.3
VIR	55	3	rcaA	AN3372.3
VIR	55	3	bimC	AN3363.3
VIR	55	3	mstF	AN3357.3
VIR	55	3	amyG	AN3309.3
VIR	55	3	amyD	AN3308.3
VIR	55	3	agsB	AN3307.3
VIR	54	3	astA	AN10387.3
VIR	54	3	apyA	AN3265.3
VIR	54	3	hk-8-5	AN3214.3
VIR	231 +	3	-	-
VIR	53	3	-	-
VIR	52	3	dclB	AN10380.3
VIR	52	3	arp11	AN3185.3
VIR	51	3	swi6	AN3154.3
VIR	51	3	nsdD	AN3152.3
VIR	51	3	prpA	AN3129.3
VIR	51	3	sgdB	AN10353.3
VIR	51	3	aaX	AN3104.3
VIR	51	3	phkA	AN3102.3
VIR	51	3	phkB	AN3101.3
VIR	51	3	rmtB	AN3096.3
VIR	51	3	hymA	AN3095.3
VIR	51	3	ganA	AN3090.3
VIR	51	3	cetA	AN3079.3
VIR	51	3	nimP	AN3075.3
VIR	51	3	oefC	AN3067.3
VIR	51	3	cmkB	AN3065.3
VIR	51	3	Calmodulin b.p.	AN3062.3
VIR	51	3	suAprgA	AN3034.3
VIR	51	3	copA	AN3026.3
VIR	51	3	kapL	AN3012.4
VIR	51	3	idpA	AN2999.3
VIR	51	3	C1-THFS	AN2998.3
VIR	51	3	rlnA	AN2984.3
VIR	51	3	gsdA	AN2981.3
VIR	51	3	gabA	AN2962.3
VIR	51	3	ste13	AN2946.3
VIR	51	3	tamA	AN2944.3
VIR	51	3	rfeA	AN2943.3
VIR	51	3	msd2	AN2936.3
VIR	51	3	stzA	AN2919.3
VIR	51	3	argA	AN2914.3
VIR	51	3	atfA	AN2911.3
VIR	51	3	podH	AN2902.3
VIR	51	3	agaA	AN2901.3
VIR	51	3	nempA	AN2900.3
VIR	51	3	fhdA	AN2893.3
VIR	51	3	calF?	AN2880.3
VIR	51	3	gmdB	AN2879.3
VIR	51	3	lysA	AN2873.3
VIR	51	3	pgmB	AN2867.3
VIR	51	3	pacC	AN2855.3
VIR	51	3	mctA	AN2840.3
VIR	51	3	gmdC	AN2829.3
VIR	189 -	3	-	-
VIR	50	3	-	-
VIR	49	3	bimE	AN2772.3
VIR	49	3	hhoA	AN2765.3
VIR	49	3	slaB	AN2756.3
VIR	49	3	matB	AN2755.3
VIR	49	3	gpgA	AN2742.3
VIR	227 +	3	-	-
VIR	48	3	sB	AN2730.3
VIR	48	3	rrpC	AN2717.3
VIR	47	3	rhoC	AN2687.3
VIR	46	3	hxkB	AN2638.3
VIR	235 -	3	-	-
VIR	45	3	acyA	AN2623.3
VIR	45	3	ipnA	AN2622.3
VIR	45	3	acvA	AN2621.3
VIR	44	3	-	-
VIR	-	3	Telomere T10	-

Chromosome VI linkage map.... Linkage data for chromosome VI
Other maps and data.... Gene lists.... References.... Maps home page