2010 Neurospora Bibliography
This bibliography represents my attempt to collect all works from the past year dealing substantially with Neurospora. Please let me know of anything published in 2009 or 2010 that is not included here or in the previous bibliography, so that it might be mentioned next year. I would be especially happy to hear of chapters from books, and articles from journals not indexed in major bibliographic services. Please also let me know of any errors in citation. Please send reprints or copies of articles to the Fungal Genetics Stock Center.
Craig Wilson, 15236 Ashworth Ave. N., Shoreline WA 98133, USA (chwilso@gmail.com)
1. Aalto, A.P., M.M. Poranen, J.M. Grimes, D.I. Stuart, and D.H. Bamford. 2010. In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa. J. Biol. Chem. 285:29367-29374.
2. Aanen, D.K., A.J.M. Debets, N.L. Glass, and S.J. Saupe. 2010. Biology and genetics of vegetative incompatibility in fungi, p. 274-288. In K. A. Borkovich and D. Ebbole (ed.), Cellular and Molecular Biology of Filamentous Fungi. American Society for Microbiology.
3. Adomas, A.B., F. Lopez-Giraldez, T.A. Clark, Z. Wang, and J.P. Townsend. 2010. Multi-targeted priming for genome-wide gene expression assays. BMC Genomics 11:477.
4. Aghapour, B., K.B. Fotouhifar, M. Javan-Nikkhah, A. Ahmadpour, and M.A. Aghajani. 2010. The first record of Neurospora tetrasperma (anam. Chrysonilia tetrasperma) on Platanus orientalis in Iran. Mycotaxon 111:103-111.
5. Akman, O.E., D.A. Rand, P.E. Brown, and A.J. Millar. 2010. Robustness from flexibility in the fungal circadian clock. BMC Systems Biology 4:88.
6. Aldabbous, M.S., M.G. Roca, A. Stout, I.C. Huang, N.D. Read, and S.J. Free. 2010. The ham-5, rcm-1 and rco-1 genes regulate hyphal fusion in Neurospora crassa. Microbiology 156:2621-2629.
7. Allgaier, S., N. Weiland, I. Hamad, and F. Kempken. 2010. Expression of ribonuclease A and ribonuclease N1 in the filamentous fungus Neurospora crassa. Appl. Microbiol. Biotechnol. 85:1041-1049.
8. Anderson, D.C., G.R. Green, K. Smith, and E.U. Selker. 2010. Extensive and varied modifications in histone H2B of wild-type and histone deacetylase 1 mutant Neurospora crassa. Biochemistry 49:5244-5257.
9. Aramayo, R., and R.J. Pratt. 2010. Meiotic trans-sensing and silencing in Neurospora, p. 132-144. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
10. Bae, B., R.P. Sullivan, H. Zhao, and S.K. Nair. 2010. Structure and engineering of L-arabinitol 4-dehydrogenase from Neurospora crassa. J. Mol. Biol. 402:230-240.
11. Bagar, T., K. Altenbach, N.D. Read, and M. Bencina. 2009. Live-Cell imaging and measurement of intracellular pH in filamentous fungi using a genetically encoded ratiometric probe. Eukaryotic Cell 8:703-712.
12. Baker, C.L. 2010. Post-translational regulation of the Neurospora crassa circadian system. Thesis (Ph.D.)--Dartmouth College. x, 218 p.
13. Baker, C.L., and J.C. Dunlap. 2010. Circadian rhythms: phosphorylating the CLOCK. Cell Cycle 9:231-232.
14. Baker, S.E. 2009. Selection to sequence: opportunities in fungal genomics. Environ. Microbiol. 11:2955-2958.
15. Bay, D.C., and D.A. Court. 2009. Effects of ergosterol on the structure and activity of Neurospora mitochondrial porin in liposomes. Can. J. Microbiol. 55:1275-1283.
16. Bell-Pedersen, D. 2010. Introduction to special edition on fungal photobiology. Fungal Genet. Biol. 47:879-880.
17. Bennett, J.W., R.H. Davis, and C. Raper. 2010. History and importance to human affairs, p. 3-7. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
18. Berchowitz, L.E., and G.P. Copenhaver. 2010. Genetic interference: Don't stand so close to me. Curr. Genomics 11:91-102.
19. Berepiki, A., A. Lichius, J.Y. Shoji, J. Tilsner, and N.D. Read. 2010. F-Actin dynamics in Neurospora crassa. Eukaryotic Cell 9:547-557.
20. Bhattacharya, A., S. Chanda, and S. Barik. 2009. Lipase and protease producing microbes from the environment of sugar beet field. Indian J. Agric. Biochem. 22:26-30.
21. Binder, U., M. Chu, N.D. Read, and F. Marx. 2010. The antifungal activity of the Penicillium chrysogenum protein PAF disrupts calcium homeostasis in Neurospora crassa. Eukaryotic Cell 9:1374-1382.
22. Bockelmann, S., D. Menche, S. Rudolph, T. Bender, S. Grond, P. von Zezschwitz, S.P. Muench, H. Wieczorek, and M. Huss. 2010. Archazolid A binds to the equatorial region of the c-ring of the vacuolar H+-ATPase. J. Biol. Chem. 285:38304-38314.
23. Bohlin, C., S.N. Olsen, M.D. Morant, S. Patkar, K. Borch, and P. Westh. 2010. A comparative study of activity and apparent inhibition of fungal β-glucosidases. Biotechnol. Bioeng. 107:943-952.
24. Boland, A., F. Tritschler, S. Heimstadt, E. Izaurralde, and O. Weichenrieder. 2010. Crystal structure and ligand binding of the MID domain of a eukaryotic Argonaute protein. EMBO Reports 11:522-527.
25. Borkovich, K., and D.J. Ebbole (ed.). 2010. Cellular and molecular biology of filamentous fungi. American Society for Microbiology. xiii, 788 p.
26. Bowman, E.J., and B.J. Bowman. 2010. Vacuoles in filamentous fungi, p. 179-190. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
27. Bowman, S.M., A. Piwowar, E.D. Arnone, R. Matsumoto, G.B. Koudelka, and S.J. Free. 2009. Characterization of GPIT-1 and GPIT-2, two auxiliary components of the Neurospora crassa GPI transamidase complex. Mycologia 101:764-772.
28. Brambl, R. 2009. Fungal physiology and the origins of molecular biology. Microbiology 155:3799-3809.
29. Braus, G.H., S. Irniger, and O. Bayram. 2010. Fungal development and the COP9 signalosome. Curr. Opin. Microbiol. 13:672-676.
30. Burns, C., P.J. Pukkila, and M.E. Zolan. 2010. Meiosis, p. 81-95. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
31. Castro-Longoria, E., M. Ferry, S. Bartnicki-Garcia, J. Hasty, and S. Brody. 2010. Circadian rhythms in Neurospora crassa: Dynamics of the clock component frequency visualized using a fluorescent reporter. Fungal Genet. Biol. 47:332-341.
32. Castro-Longoria, E., A.R. Vilchis-Nestor, and M. Avalos-Borja. 2010. Biosynthesis of silver, gold and bimetallic nanoparticles using the filamentous fungus Neurospora crassa. Colloids Surf. B Biointerfaces :doi:10.1016/j.colsurfb.2010.10.035.
33. Castro, A., C. Lemos, A. Falcao, A.S. Fernandes, N.L. Glass, and A. Videira. 2010. Rotenone enhances the antifungal properties of staurosporine. Eukaryotic Cell 9:906-914.
34. Chatterjee, S. 2010. Fatal attraction: bacteria exploit fungal heterokaryon incompatibility to obtain nutrients. J. Biosci. 35:329-330.
35. Chayadi, A., and A. Surya. 2010. Penangkapan mikroba mixed culture dari alam sebagai inokulum dalam pembuatan ragi oncom menggunakan media kacang tanah, kedelai, dan jagung. Undergraduate thesis, Teknik Kimia UNDIP. 5 p.
36. Chen, C.-H. 2010. Light responses and photoadaptation in Neurospora crassa. Thesis (Ph.D.)--Dartmouth College. 201 p.
37. Chen, C.H., B.S. DeMay, A.S. Gladfelter, J.C. Dunlap, and J.J. Loros. 2010. Physical interaction between VIVID and white collar complex regulates photoadaptation in Neurospora. Proc. Natl. Acad. Sci. U.S.A. 107:16715-16720.
38. Chen, C.H., J.C. Dunlap, and J.J. Loros. 2010. Neurospora illuminates fungal photoreception. Fungal Genet. Biol. 47:922-929.
39. Chen, Y.-R., Y.-F. Liu, Y.-J. Luo, and P. Wei. 2009. The identification of Neurospora intermedia and its potential for bioconversion cellulose to ethanol. J. Chem. Eng. Chinese Universities 23:819-824.
40. Cheng, Z., F. Liu, X.P. Zhang, and W. Wang. 2009. Reversible phosphorylation subserves robust circadian rhythms by creating a switch in inactivating the positive element. Biophys. J. 97:2867-2875.
41. Choi, Y.E. 2008. Characterizing the regulatory mechanisms in Fusarium verticillioides secondary metabolism using functional genomics approaches. Thesis (Ph.D.)--Texas A&M University. x, 119 p.
42. Cichewicz, R.H. 2010. Epigenome manipulation as a pathway to new natural product scaffolds and their congeners. Nat. Prod. Rep. 27:11-22.
43. Clutterbuck, A.J., and E.U. Selker. 2010. Transposable elements and repeat-induced point mutation, p. 124-131. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
44. Collopy, P.D., H.V. Colot, G. Park, C. Ringelberg, C.M. Crew, K.A. Borkovich, and J.C. Dunlap. 2010. High-throughput construction of gene deletion cassettes for generation of Neurospora crassa knockout strains. Methods Mol. Biol. 638:33-40.
45. Corratge-Faillie, C., M. Jabnoune, S. Zimmermann, A.A. Very, C. Fizames, and H. Sentenac. 2010. Potassium and sodium transport in non-animal cells: the Trk/Ktr/HKT transporter family. Cell. Mol. Life Sci. 67:2511-2532.
46. Corrochano, L.M., and J. Avalos. 2010. Light sensing, p. 417-441. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
47. Cuomo, C.A., and B.W. Birren. 2010. The Fungal Genome Initiative and lessons learned from genome sequencing, p. 833-855, Meth. Enzymol., Vol 470: Guide to Yeast Genetics.
48. Davis, R.H. 2010. Amino acids and polyamines: polyfunctional proteins, metabolic cycles, and compartmentation, Chap. 24. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
49. Dayaram, S.C., and A. Patel. 2008. A new record of pink mould in Pleurotus spp. from Bihar, India. J. Mycol. Plant Pathol. 38:674-675.
50. de Jesus, G.J., C.R. Corso, A. de Campos, and S.M.M. Franchetti. 2010. Biodegradation of erythrosin B dye by paramorphic Neurospora crassa 74A. Braz. Arch. Biol. Technol. 53:473-480.
51. Delgado-Alvarez, D.L., O.A. Callejas-Negrete, N. Gomez, M. Freitag, R.W. Roberson, L.G. Smith, and R.R. Mourino-Perez. 2010. Visualization of F-actin localization and dynamics with live cell markers in Neurospora crassa. Fungal Genet. Biol. 47:573-586.
52. Diegmann, J., A. Stuck, C. Madeti, and T. Roenneberg. 2010. Entrainment elicits period aftereffects in Neurospora crassa. Chronobiol. Int. 27:1335-1347.
53. Dieterle, M.G., A.E. Wiest, M. Plamann, and K. McCluskey. 2010. Characterization of the temperature-sensitive mutations un-7 and png-1 in Neurospora crassa. PloS One 5.
54. Dixit, P., S. Singh, R. Vancheeswaran, K. Patnala, and S. Eapen. 2010. Expression of a Neurospora crassa zinc transporter gene in transgenic Nicotiana tabacum enhances plant zinc accumulation without co-transport of cadmium. Plant Cell Environ. 33:1697-1707.
55. Dominguez, L., A. Sosa-Peinado, and W. Hansberg. 2010. Catalase evolved to concentrate H2O2 at its active site. Arch. Biochem. Biophys. 500:82-91.
56. Du, J., S. Li, and H. Zhao. 2010. Discovery and characterization of novel d-xylose-specific transporters from Neurospora crassa and Pichia stipitis. Mol. Biosyst. 6:2150-2156.
57. Dvash, E., G. Kra-Oz, C. Ziv, S. Carmeli, and O. Yarden. 2010. The NDR kinase DBF-2 is involved in regulation of mitosis, conidial development, and glycogen metabolism in Neurospora crassa. Eukaryotic Cell 9:502-513.
58. Ebbole, D.J. 2010. The conidium, Chap. 36. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
59. Eliades, L., M. Cabello, C. Voget, B. Galarza, and M. Saparrat. 2010. Screening for alkaline keratinolytic activity in fungi isolated from soils of the biosphere reserve "Parque Costero del Sur" (Argentina). World J. Microbiol. Biotechnol. 26:2105-2111.
60. Endo, T., and K. Yamano. 2010. Transport of proteins across or into the mitochondrial outer membrane. Biochim. Biophys. Acta-Mol. Cell Res. 1803:706-714.
61. Faehnle, C.R., and L. Joshua-Tor. 2010. Argonaute MID domain takes centre stage. EMBO Rep. 11:564-565.
62. Fagbohun, E.D., O.K. Abegunde, and O.M. David. 2010. Nutritional and mycoflora changes during storage of plantain chips and the health implications. J. Agric. Biotechnol. Sustainable Dev. 2:61-65.
63. Francuz, B., H. Yera, L. Geraut, L. Bensefa-Colas, Z.H. Nghiem, and D. Choudat. 2010. Occupational asthma induced by Chrysonilia sitophila in a worker exposed to coffee grounds. Clin. Vaccine Immunol. 17:1645-1646.
64. Froehlich, A.C., C.H. Chen, W.J. Belden, C. Madeti, T. Roenneberg, M. Merrow, J.J. Loros, and J.C. Dunlap. 2010. Genetic and molecular characterization of a cryptochrome from the filamentous fungus Neurospora crassa. Eukaryotic Cell 9:738-750.
65. Galazka, J.M., C. Tian, W.T. Beeson, B. Martinez, N.L. Glass, and J.H. Cate. 2010. Cellodextrin transport in yeast for improved biofuel production. Science 330:84-86.
66. Greenwald, C.J., T. Kasuga, N.L. Glass, B.D. Shaw, D.J. Ebbole, and H.H. Wilkinson. 2010. Temporal and spatial regulation of gene expression during asexual development of Neurospora crassa. Genetics doi:10.1534/genetics.110.121780.
67. Grissa, I., F. Bidard, P. Grognet, S. Grossetete, and P. Silar. 2010. The Nox/Ferric reductase/Ferric reductase-like families of Eumycetes. Fungal Biol. 114:766-777.
68. Gu, C.G., J.X. Wang, and Z.H. Liu. 2009. Free-running period of neurons in the suprachiasmatic nucleus: Its dependence on the distribution of neuronal coupling strengths. Phys. Rev. E 80: 030904.
69. Guo, J., G. Huang, J. Cha, and Y. Liu. 2010. Biochemical methods used to study the gene expression and protein complexes in the filamentous fungus Neurospora crassa. Methods Mol. Biol. 638:189-200.
70. Guo, J., and Y. Liu. 2010. Molecular mechanism of the Neurospora circadian oscillator. Protein & Cell 1:331-341.
71. Guo, J.H., P. Cheng, and Y. Liu. 2010. Functional significance of FRH in regulating the phosphorylation and stability of Neurospora circadian clock protein FRQ. J. Biol. Chem. 285:11508-11515.
72. Hadley, E.M. 2009. Characterization of the set-10 mutant in Neurospora crassa. Thesis (Honors) -- University of Oregon. v, 37 p.
73. Hagemann, R. 2010. The foundation of extranuclear inheritance: plastid and mitochondrial genetics. Mol. Genet. Genomics 283:199-209.
74. Haliki-Uztan, A., M. Ates, O. Abaci, O. Gulbahar, N. Erdem, O. Ciftci, and H. Boyacioglu. 2010. Determination of potential allergenic fungal flora and its clinical reflection in suburban elementary schools in Izmir. Environ. Monit. Assess. 168:691-702.
75. Hall, C., J. Welch, D.J. Kowbel, and N.L. Glass. 2010. Evolution and diversity of a fungal self/nonself recognition locus. PLoS One 5:e14055.
76. Held, M., C. Edwards, and D.V. Nicolau. 2010. Temporal and spatial in vivo optical analysis of microtubules in Neurospora crassa. Prog. Biomed. Optics Imaging – Proc. SPIE 7568:art. no. 75680V.
77. Held, M., A.P. Lee, C. Edwards, and D.V. Nicolau. 2010. Microfluidics structures for probing the dynamic behaviour of filamentous fungi. Microelectronic Eng. 87:786-789.
78. Hoi, J.W.S., and B. Dumas. 2010. Ste12 and ste12-like proteins, fungal transcription factors regulating development and pathogenicity. Eukaryotic Cell 9:480-485.
79. Honda, S., Z.A. Lewis, M. Huarte, L.Y. Cho, L.L. David, Y. Shi, and E.U. Selker. 2010. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes Dev. 24:443-454.
80. Hsu, L.C., S.L. Wang, Y.C. Lin, M.K. Wang, P.N. Chiang, J.C. Liu, W.H. Kuan, C.C. Chen, and Y.M. Tzou. 2010. Cr(VI) removal on fungal biomass of Neurospora crassa: the importance of dissolved organic carbons derived from the biomass to Cr(VI) reduction. Environ. Sci. Technol. 44:6202-6208.
81. Huang, H. 2008. The light mutant oscillator (LMO): a novel circadian oscillator in Neurospora crassa. Thesis (M.S.)--Texas A&M University. xi, 90 p.
82. Huang, S. 2010. The overlap feature of the genetic equidistance result-a fundamental biological phenomenon overlooked for nearly half of a century. Biology Theory 5:40-52.
83. Hunt, S.M., S. Thompson, M. Elvin, and C. Heintzen. 2010. VIVID interacts with the WHITE COLLAR complex and FREQUENCY-interacting RNA helicase to alter light and clock responses in Neurospora. Proc. Natl. Acad. Sci. U.S.A. 107:16709-16714.
84. Hutchison, E.A., and N.L. Glass. 2010. Meiotic regulators Ndt80 and Ime2 have different roles in Saccharomyces and Neurospora. Genetics 185:1271-1282.
85. Idnurm, A., and J. Heitman. 2010. Ferrochelatase is a conserved downstream target of the blue light-sensing White collar complex in fungi. Microbiology 156:2393-2407.
86. Idnurm, A., S. Verma, and L.M. Corrochano. 2010. A glimpse into the basis of vision in the kingdom Mycota. Fungal Genet. Biol. 47:881-892.
87. Isakova, E.P., I. Deriabina Iu, N.N. Gessler, T.A. Belozerskaia, and M. Rabinovich Ia. 2010. Comparative analysis of respiratory activity in the wild type strain of Neurospora crassa and its photoreceptor complex mutants. Appl. Biochem. Microbiol. 46:318-323.
88. Ischebeck, T., S. Seiler, and I. Heilmann. 2010. At the poles across kingdoms: phosphoinositides and polar tip growth. Protoplasma 240:13-31.
89. Iyer, P. 2010. Study of cell fusion mutants in Neurospora crassa. Thesis (M.S.)--State University of New York at Buffalo. 114 p..
90. Jayalakshmi, S., A. Patra, V.K. Lal, and A.K. Ghosh. 2010. Antimicrobial activity of “Trinpanchmool” drugs. Arch. Appl. Sci. Res. 2:183-187.
91. Jian-Cheng, S. 2010. Signal transduction and amplification in a circadian oscillator: Interaction between two colored noises. J. Theor. Biol. 265:565-571.
92. Jin, H, and Zhu, J-K. 2010. How many ways are there to generate small RNAs? Mol. Cell. 38:775-777.
93. Jolma, I.W., O.D. Laerum, C. Lillo, and P. Ruoff. 2010. Circadian oscillators in eukaryotes. Wiley Interdiscip. Rev. Syst. Biol. Med. 2:533-549.
94. Jones, C.A., and K.A. Borkovich. 2010. Analysis of mitogen-activated protein kinase phosphorylation in response to stimulation of histidine kinase signaling pathways in Neurospora. Methods Enzymol. 471:319-334.
95. Joubert, A., B. Calmes, R. Berruyer, M. Pihet, J.P. Bouchara, P. Simoneau, and T. Guillemette. 2010. Laser nephelometry applied in an automated microplate system to study filamentous fungus growth. Biotechniques 48:399-404.
96. Justa-Schuch, D. 2010. Regulation of septum formation by RHO4 GTPase signalling in Neurospora crassa. Thesis (Ph.D.)--Universität Göttingen. iii, 92 p.
97. Justa-Schuch, D., Y. Heilig, C. Richthammer, and S. Seiler. 2010. Septum formation is regulated by the RHO4-specific exchange factors BUD3 and RGF3 and by the landmark protein BUD4 in Neurospora crassa. Mol. Microbiol. 76:220-235.
98. Kang, W.-K., B.-U. Lee, Y.-H. Park, E.-S. Koh, J.-Y. Ju, J.-H. Lee, H.-W. Kim, and H.-J. Choi. 2009. S-adenosylmethionine-6-N-lysine-methyltransferase from Neurospora crassa, a gene encoding the same, a vector and host cell containing the same, and method for producing trimethyllysine using the host cell. U.S. patent 07598065.
99. Kaplan, O., K. Bezouska, A. Malandra, A.B. Vesela, A. Petrickova, J. Felsberg, A. Rinagelova, V. Kren, and L. Martinkova. 2010. Genome mining for the discovery of new nitrilases in filamentous fungi. Biotechnol. Lett. : doi: 10.1007/s10529-010-0421-7.
100. Kapoor, M. 2009. A procedure for parallel purification of four stress-related Neurospora proteins in their native state. Fungal Genetics Reports 56:8-11.
101. Kato, A., K. Kurashima, M. Chae, S. Sawada, S. Hatakeyama, S. Tanaka, and H. Inoue. 2010. Deletion of a novel F-box protein, MUS-10, in Neurospora crassa leads to altered mitochondrial morphology, instability of mtDNA and senescence. Genetics 185:1257-1269.
102. Katz, M.E., and J.M. Kelly. 2010. Glucose, p. 291-311. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
103. Kaushik, G., M. Gopal, and I.S. Thakur. 2010. Evaluation of performance and community dynamics of microorganisms during treatment of distillery spent wash in a three stage bioreactor. Bioresour. Technol. 101:4296-4305.
104. Khatun, R. 2010. Differential localization of protein kinase C in Neurospora crassa by diacylglycerol. Thesis (M.S.)--York University. 164 p.
105. Khatun, R., and P. Lakin-Thomas. 2010. Activation and localization of protein kinase C in Neurospora crassa. Fungal Genet. Biol. :doi:10.1016/j.fgb.2010.11.002.
106. Kinney, M., A. Wiest, M. Plamann, and K. McCluskey. 2009. Identification of the Neurospora crassa mutation un-10 as a point mutation in a gene encoding eukaryotic translation initiation factor 3, subunit B. Fungal Genetics Reports 56:6-7.
107. Kiran, I., Z. Durceylan, N. Kirimer, K.H. Baser, Y. Noma, and F. Demirci. 2010. Biotransformation of alpha-cedrol and caryophyllene oxide by the fungus Neurospora crassa. Nat. Prod. Commun. 5:515-518.
108. Klix, V., M. Nowrousian, C. Ringelberg, J.J. Loros, J.C. Dunlap, and S. Poggeler. 2010. Functional characterization of MAT1-1-specific mating-type genes in the homothallic ascomycete Sordaria macrospora provides new insights into essential and nonessential sexual regulators. Eukaryotic Cell 9:894-905.
109. Korripally, P., A. Tiwari, A. Haritha, P. Kiranmayi, and M. Bhanoori. 2010. Characterization of Ctr family genes and the elucidation of their role in the life cycle of Neurospora crassa. Fungal Genet. Biol. 47:237-245.
110. Kothe, G.O., M. Kitamura, M. Masutani, E.U. Selker, and H. Inoue. 2010. PARP is involved in replicative aging in Neurospora crassa. Fungal Genet. Biol. 47:297-309.
111. Kritsky, M.S., T.A. Telegina, Y.L. Vechtomova, M.P. Kolesnikov, T.A. Lyudnikova, and O.A. Golub. 2010. Excited flavin and pterin coenzyme molecules in evolution. Biochemistry (Moscow) 75:1200-1216.
112. Kruse, T., C. Gehl, M. Geisler, M. Lehrke, P. Ringel, S. Hallier, R. Hansch, and R.R. Mendel. 2010. Identification and biochemical characterization of molybdenum cofactor-binding proteins from Arabidopsis thaliana. J. Biol. Chem. 285:6623-6635.
113. Kuck, U., and B. Hoff. 2010. New tools for the genetic manipulation of filamentous fungi. Appl. Microbiol. Biotechnol. 86:51-62.
114. Kumar, R., H.M. Bourbon, and B. de Massy. 2010. Functional conservation of Mei4 for meiotic DNA double-strand break formation from yeasts to mice. Genes Dev. 24:1266-1280.
115. Kutil, B.L. 2006. The evolution of LOL, the secondary metabolite gene cluster for insecticidal loline alkaloids in fungal endophytes of grasses. Thesis (Ph.D.)--Texas A&M University. xi, 121 p.
116. Lai, J., S.K. Ng, F.F. Liu, R.N. Patkar, Y. Lu, J.R. Chan, A. Suresh, N. Naqvi, and G. Jedd. 2010. Marker fusion tagging, a new method for production of chromosomally encoded fusion proteins. Eukaryotic Cell 9:827-830.
117. Lee, D.W., R. Millimaki, and R. Aramayo. 2010. QIP, a component of the vegetative RNA silencing pathway, is essential for meiosis and suppresses meiotic silencing in Neurospora crassa. Genetics 186:127-133.
118. Lee, H.C., A.P. Aalto, Q. Yang, S.S. Chang, G. Huang, D. Fisher, J. Cha, M.M. Poranen, D.H. Bamford, and Y. Liu. 2010. The DNA/RNA-dependent RNA polymerase QDE-1 generates aberrant RNA and dsRNA for RNAi in a process requiring replication protein A and a DNA helicase. PLoS Biol 8.
119. Lee, H.C., L. Li, W. Gu, Z. Xue, S.K. Crosthwaite, A. Pertsemlidis, Z.A. Lewis, M. Freitag, E.U. Selker, C.C. Mello, and Y. Liu. 2010. Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi. Mol. Cell 38:803-814.
120. Lenaz, G., and M.L. Genova. 2010. Structure and organization of mitochondrial respiratory complexes: a new understanding of an old subject. Antioxid. Redox Signal. 12:961-1008.
121. Lew, R.R. 2010. Turgor and net ion flux responses to activation of the osmotic MAP kinase cascade by fludioxonil in the filamentous fungus Neurospora crassa. Fungal Genet. Biol. 47:721-726.
122. Lewis, Z.A., K.K. Adhvaryu, S. Honda, A.L. Shiver, M. Knip, R. Sack, and E.U. Selker. 2010. DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. PLoS Genet. 6:e1001196.
123. Lewis, Z.A., K.K. Adhvaryu, S. Honda, A.L. Shiver, and E.U. Selker. 2010. Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin. Proc. Natl. Acad. Sci. U.S.A. 107:8310-8315.
124. Lewis, Z.A., and E.U. Selker. 2010. Chromatin structure and modification, p. 113-123. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
125. Li, C.Y., L. Liu, J. Yang, J.B. Li, Y. Su, Y. Zhang, Y.Y. Wang, and Y.Y. Zhu. 2009. Genome-wide analysis of microsatellite sequence in seven filamentous fungi. Interdiscip. Sci. 1:141-150.
126. Li, D.U., J. Arlt, J. Richardson, R. Walker, A. Buts, D. Stoppa, E. Charbon, and R. Henderson. 2010. Real-time fluorescence lifetime imaging system with a 32 × 32 013μm CMOS low dark-count single-photon avalanche diode array. Optics Express 18:10257-10269.
127. Li, L., S.S. Chang, and Y. Liu. 2010. RNA interference pathways in filamentous fungi. Cell. Mol. Life Sci. 67:3849-3863.
128. Li, S., and P. Lakin-Thomas. 2010. Effects of prd circadian clock mutations on FRQ-less rhythms in Neurospora. J. Biol. Rhythms 25:71-80.
129. Lin, C.T., E. Meyhofer, and K. Kurabayashi. 2010. Predicting the stochastic guiding of kinesin-driven microtubules in microfabricated tracks: a statistical-mechanics-based modeling approach. Phys. Rev. E 81:011919.
130. Lin, Y.C., S.L. Wang, W.C. Shen, P.M. Huang, P.N. Chiang, J.C. Liu, C.C. Chen, and Y.M. Tzou. 2009. Photo-enhancement of Cr(VI) reduction by fungal biomass of Neurospora crassa. Appl. Cat. B 92:294-300.
131. Maddi, A., and S.J. Free. 2010. α-1,6-Mannosylation of N-Linked oligosaccharide present on cell wall proteins is required for their incorporation into the cell wall in the filamentous fungus Neurospora crassa. Eukaryotic Cell 9:1766-1775.
132. Madhavi, V., and S.S. Lele. 2009. Laccase: properties and applications. Bioresources 4:1694-1717.
133. Maerz, S., Y. Funakoshi, Y. Negishi, T. Suzuki, and S. Seiler. 2010. The Neurospora peptide:N-glycanase ortholog PNG1 is essential for cell polarity despite its lack of enzymatic activity. J. Biol. Chem. 285:2326-2332.
134. Mager, F., L. Sokolova, J. Lintzel, B. Brutschy, and S. Nussberger. 2010. LILBID-mass spectrometry of the mitochondrial preprotein translocase TOM. J. Phys. Condens. Matter 22:454132.
135. Malzahn, E., S. Ciprianidis, K. Kaldi, T. Schafmeier, and M. Brunner. 2010. Photoadaptation in Neurospora by competitive interaction of activating and inhibitory LOV domains. Cell 142:762-772.
136. Managadze, D., C. Wurtz, S. Wiese, H.E. Meyer, G. Niehaus, R. Erdmann, B. Warscheid, and H. Rottensteiner. 2010. A proteomic approach towards the identification of the matrix protein content of the two types of microbodies in Neurospora crassa. Proteomics 10:3222-3234.
137. Managadze, D., C. Wurtz, S. Wiese, M. Schneider, W. Girzalsky, H.E. Meyer, R. Erdmann, B. Warscheid, and H. Rottensteiner. 2010. Identification of PEX33, a novel component of the peroxisomal docking complex in the filamentous fungus Neurospora crassa. Eur. J. Cell Biol. 89:955-964.
138. Martinez, D.A., and M.A. Nelson. 2010. The next generation becomes the now generation. PloS Genetics 6:e1000906.
139. Mazin, A.L. 2009. Suicidal function of DNA methylation in age-related genome disintegration. Ageing Res. Rev. 8:314-327.
140. McCluskey, K., A. Wiest, and M. Plamann. 2010. The Fungal Genetics Stock Center: a repository for 50 years of fungal genetics research. J. Biosci. 35:119-126.
141. McDonald, A.E. 2009. Alternative oxidase: what information can protein sequence comparisons give us? Physiologia Plantarum 137:328-341.
142. McLaughlin, M.T. 2007. A dicer-like protein is essential for normal sexual development and meiotic silencing in the filamentous fungus Neurospora crassa. Thesis (M.S.)--Texas A&M University. vii, 90 p.
143. Meena, N., H. Kaur, and A.K. Mondal. 2010. Interactions among HAMP domain repeats act as an osmosensing molecular switch in group III hybrid histidine kinases from fungi. J. Biol. Chem. 285:12121-12132.
144. Menkis, A., C.A. Whittle, and H. Johannesson. 2010. Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma. BMC Evol. Biol. 10:234.
145. Merrow, M., D. Lenssen, and T. Roenneberg. 2010. Comparative clocks. Protein Rev. 12:157-177.
146. Merrow, M., and M. Maas. 2009. Circadian clocks: evolution in the shadows. Curr. Biol. 19:R1042-R1045.
147. Mewes, H.W., A. Ruepp, F. Theis, T. Rattei, M. Walter, D. Frishman, K. Suhre, M. Spannagl, K.F. Mayer, V. Stumpflen, and A. Antonov. 2010. MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Res.: doi: 10.1093/nar/gkq1157.
148. Mitrofanov, S.I., A.Y. Panchin, S.A. Spirin, A.V. Alexeevski, and Y.V. Panchin. 2010. Exclusive sequences of different genomes. J. Bioinform. Comput. Biol. 8:519-534.
149. Nargang, F.E., and J.C. Kennell. 2010. Mitochondria and respiration, p. 155-178. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
150. Nitschke, M., S.G. Costa, and J. Contiero. 2010. Structure and applications of a rhamnolipid surfactant produced in soybean oil waste. Appl. Biochem. Biotechnol. 160:2066-2074.
151. Nowrousian, M., J.E. Stajich, M. Chu, I. Engh, E. Espagne, K. Halliday, J. Kamerewerd, F. Kempken, B. Knab, H.C. Kuo, H.D. Osiewacz, S. Poggeler, N.D. Read, S. Seiler, K.M. Smith, D. Zickler, U. Kuck, and M. Freitag. 2010. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet 6:e1000891.
152. Nuraini. 2009. Performa broiler dengan ransum mengandung campuran ampas sagu dan ampas tahu yang difermentasi dengan Neurospora crassa [Performances of broilers fed sago and tofu by-product mixture fermented with Neurospora crassa]. Media Peternakan 32:196-203.
153. Nuraini, Sabrina, and S.A. Latif. 2008. Performa ayam dan kualitas telur yang menggunakan ransum mengandung onggok fermentasi dengan Neurospora crassa [Performances and egg quality of layer fed tapioca by-products fermented with Neurospora crassa]. Media Peternakan 31:195-202.
154. Obe, G., C. Johannes, and S. Ritter. 2010. The number and not the molecular structure of DNA double-strand breaks is more important for the formation of chromosomal aberrations: A hypothesis. Mutat. Res. 701:3-11.
155. Olmedo, M., L. Navarro-Sampedro, C. Ruger-Herreros, S.R. Kim, B.K. Jeong, B.U. Lee, and L.M. Corrochano. 2010. A role in the regulation of transcription by light for RCO-1 and RCM-1, the Neurospora homologs of the yeast Tup1-Ssn6 repressor. Fungal Genet. Biol. 47:939-952.
156. Olmedo, M., C. Ruger-Herreros, and L.M. Corrochano. 2010. Regulation by blue light of the fluffy gene encoding a major regulator of conidiation in Neurospora crassa. Genetics 184:651-658.
157. Olmedo, M., C. Ruger-Herreros, E.M. Luque, and L.M. Corrochano. 2010. A complex photoreceptor system mediates the regulation by light of the conidiation genes con-10 and con-6 in Neurospora crassa. Fungal Genet. Biol. 47:352-363.
158. Paietta, J.V. 2010. Sulfur, phosphorus, and iron metabolism, p. 359-375. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
159. Palma-Guerrero, J., J.A. Lopez-Jimenez, A.J. Perez-Berna, I.C. Huang, H.B. Jansson, J. Salinas, J. Villalain, N.D. Read, and L.V. Lopez-Llorca. 2010. Membrane fluidity determines sensitivity of filamentous fungi to chitosan. Mol. Microbiol. 75:1021-1032.
160. Paoletti, M., and S.J. Saupe. 2009. Fungal incompatibility: Evolutionary origin in pathogen defense? Bioessays 31:1201-1210.
161. Park, B.H., T.V. Karpinets, M.H. Syed, M.R. Leuze, and E.C. Uberbacher. 2010. CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20:1574-1584.
162. Park, G., C.A. Jones, and K.A. Borkovich. 2010. Signal transduction pathways, p. 50-59. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
163. Pereira, M.J. 2009. Single molecule characterization of the Varkud Satellite ribozyme and bulk native purification of non-coding RNA. Thesis (Ph.D.)--University of Michigan. 96 p.
164. Plesofsky, N. 2010. Heat shock response, Chap. 32. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
165. Potter, C.J., B. Tasic, E.V. Russler, L. Liang, and L. Luo. 2010. The Q system: a repressible binary system for transgene expression, lineage tracing, and mosaic analysis. Cell 141:536-548.
166. Prakash, M.S. 2010. A mathematical model for ethanol fermentation by mutant Neurospora crassa. Res. J. Biotechnol. 5:69-73.
167. Prakash, M.S. 2010. A simple unstructured mathematical model for ethanol fermentation by mutant Neurospora crassa. Int. J. Chem. Enr. Res. 2:13–21.
168. Priatni, S., S. Hartati, P. Dewi, L.B.S. Kardono, M. Smggih, and T. Gusdinar. 2010. Fatty acid methyl ester from Neurospora intermedia N-l isolated from Indonesian red peanut cake (oncom merah). Pak. J. Biol. Sci. 13:731-737.
169. Qi, X.Q., L. Gao, Y.J. Su, and T. Wang. 2010. [Phylogenetic analysis and detection of selective pressure on the CVNH domains]. Yi chuan = Hereditas 32:87-94.
170. Querfurth, C. 2009. Die rolle der phosphorylierung des negativen elements FREQUENCY in der circadianen uhr von Neurospora crassa [The role of phosphorylation of the negative element FREQUENCY in the circadian clock of Neurospora crassa]. Thesis (Ph.D.)--Universität Heidelberg. vi, 120 p.
171. Rahim, T., A.L. Ray, S.P. Beauty, and D.J. Gomes. 2009. Induction of mutation in Neurospora crassa with ultraviolet radiation and evaluation of cellulase and xylanase activities. Bangladesh J. Bot. 38:201-203.
172. Ray, A.L., M.A. Jahan, and T. Rahim. 2010. Mutation in Neurospora crassa with leaf extract of Citrus aurantifolia and their soluble protein content. Dhaka Univ. J. Biol. Sci. 19:151-155.
173. Ray, A.L., and T. Rahim. 2010. Cellulase and xylanase activities of mutants of Neurospora crassa induced with leaf extract of Abroma augusta L. Bangladesh J. Sci. Ind. Res. 45:151-154.
174. Razafsky, D.S. 2009. Structure function and regulation of the microtubule motors dynein and kinesin. Thesis (Ph.D.)--University of Missouri--Kansas City. xii, 203 p.
175. Read, N.D., A. Fleißner, M.G. Roca, and N.L. Glass. 2010. Hyphal fusion, p. 260-273. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
176. Remi, J., M. Merrow, and T. Roenneberg. 2010. A circadian surface of entrainment: varying T, τ, and photoperiod in Neurospora crassa. J. Biol. Rhythms 25:318-328.
177. Riyaz-Ul-Hassan, S., S. Rehman, A.S. Shawl, G.N. Qazi, and J.W. Taylor. 2009. Fungal endophyte misidentified as Neurospora crassa. Fungal Genetics Reports 56:5.
178. Roca, M.G., H.C. Kuo, A. Lichius, M. Freitag, and N.D. Read. 2010. Nuclear dynamics, mitosis, and the cytoskeleton during the early stages of colony initiation in Neurospora crassa. Eukaryotic Cell 9:1171-1183.
179. Roenneberg, T., R. Hut, S. Daan, and M. Merrow. 2010. Entrainment concepts revisited. J. Biol. Rhythms 25:329-339.
180. Roenneberg, T., T. Radic, M. Gödel, and M. Merrow. 2009. Seasonality and photoperiodism in fungi, p. 134-163. In R. J. Nelson (ed.), Photoperiodism: the biological calendar. Oxford University Press.
181. Roenneberg, T., J. Remi, and M. Merrow. 2010. Modeling a circadian surface. J. Biol. Rhythms 25:340-349.
182. Romero-Noguera, J., I. Martin-Sanchez, M. del Mar Lopez-Miras, J. Miguel Ramos-Lopez, and F. Bolivar-Galiano. 2010. Biodeterioration patterns found in dammar resin used as art material. Electron. J. Biotechnol. 13:Article No. 7.
183. Romero-Ruiz, M., K.R. Mahendran, R. Eckert, M. Winterhalter, and S. Nussberger. 2010. Interactions of mitochondrial presequence peptides with the mitochondrial outer membrane preprotein translocase TOM. Biophys J 99:774-781.
184. Roper, M., A. Seminara, M.M. Bandi, A. Cobb, H.R. Dillard, and A. Pringle. 2010. Dispersal of fungal spores on a cooperatively generated wind. Proc. Natl. Acad. Sci. U.S.A. 107:17474-17479.
185. Rountree, M.R., and E.U. Selker. 2010. DNA methylation and the formation of heterochromatin in Neurospora crassa. Heredity 105:38-44.
186. Salichos, L., and A. Rokas. 2010. The diversity and evolution of circadian clock proteins in fungi. Mycologia 102:269-278.
187. Schwartz, S.L., and M.L. Farman. 2010. Systematic overrepresentation of DNA termini and underrepresentation of subterminal regions among sequencing templates prepared from hydrodynamically sheared linear DNA molecules. BMC Genomics 11:87.
188. Seiler, S., and D. Justa-Schuch. 2010. Conserved components, but distinct mechanisms for the placement and assembly of the cell division machinery in unicellular and filamentous ascomycetes. Mol. Microbiol. 78:1058-1076.
189. Sharon, A. (ed.). 2010. Molecular and cell biology methods for fungi. Methods in Molecular Biology vol. 638. Springer. xi, 321 p.
190. Shi, J.C. 2010. Signal transduction and amplification in a circadian oscillator: Interaction between two colored noises. J. Theor. Biol. 265:565-571.
191. Shi, J.C., and M. Luo. 2010. Effect of colored noise on circadian oscillation and internal signal stochastic resonance in biological clock system. Prog. Biochem. Biophys. 37:85-93.
192. Shi, M., M. Collett, J.J. Loros, and J.C. Dunlap. 2010. FRQ-interacting RNA helicase mediates negative and positive feedback in the Neurospora circadian clock. Genetics 184:351-361.
193. Silva, I.F., M. Raimondi, S. Zacchino, V. Cechinel, V.F. Noldin, V.S. Rao, J.C.S. Lima, and D.T.O. Martins. 2010. Evaluation of the antifungal activity and mode of action of Lafoensia pacari A. St.-Hil., Lythraceae, stem-bark extracts, fractions and ellagic acid. Rev. Bras. Farmacogn. 20:422-428.
194. Simonin, A.R., C.G. Rasmussen, M. Yang, and N.L. Glass. 2010. Genes encoding a striatin-like protein (ham-3) and a forkhead associated protein (ham-4) are required for hyphal fusion in Neurospora crassa. Fungal Genet. Biol. 47:855-868.
195. Singh, P.K., S.V. Iyer, T.N. Sowjanya, B.K. Raj, and D.P. Kasbekar. 2010. Translocations used to generate chromosome segment duplications in Neurospora can disrupt genes and create novel open reading frames. J. Biosci. 35:539–546.
196. Smith, K.M., J.R. Dobosy, J.E. Reifsnyder, M.R. Rountree, D.C. Anderson, G.R. Green, and E.U. Selker. 2010. H2B- and H3-specific histone deacetylases are required for DNA methylation in Neurospora crassa. Genetics: 10.1534/genetics.110.123315.
197. Smith, K.M., G. Sancar, R. Dekhang, C.M. Sullivan, S. Li, A.G. Tag, C. Sancar, E.L. Bredeweg, H.D. Priest, R.F. McCormick, T.L. Thomas, J.C. Carrington, J.E. Stajich, D. Bell-Pedersen, M. Brunner, and M. Freitag. 2010. Transcription factors in light and circadian clock signaling networks revealed by genomewide mapping of direct targets for Neurospora white collar complex. Eukaryotic Cell 9:1549-1556.
198. Smith, M.D. 2009. A catalytic mechanism for the VS ribozyme: using a fast-cleaving ribozyme as a model for studying RNA catalysis. Thesis (Ph.D.)--University of Toronto. 252 p.
199. Smith, R.P. 2009. Trans-species expression of a nonself recognition domain. Thesis (Ph.D.)--Carleton University. xvii, 238 p, [40] plates.
200. Spevak, C.C., I. Ivanov, and M.S. Sachs. 2010. Sequence requirements for ribosome stalling by the arginine attenuator peptide. J. Biol. Chem.:doi:10.1074/jbc.M110.164152.
201. Stajich, J.E., M.L. Berbee, M. Blackwell, D.S. Hibbett, T.Y. James, J.W. Spatafora, and J.W. Taylor. 2009. The fungi. Curr. Biol. 19:R840-R845.
202. Stamatakis, M., and N.V. Mantzaris. 2010. Intrinsic noise and division cycle effects on an abstract biological oscillator. Chaos 20:033118.
203. Strandberg, R., K. Nygren, A. Menkis, T.Y. James, L. Wik, J.E. Stajich, and H. Johannesson. 2010. Conflict between reproductive gene trees and species phylogeny among heterothallic and pseudohomothallic members of the filamentous ascomycete genus Neurospora. Fungal Genet. Biol. 47:869-878.
204. Strauss, J., and Y. Reyes-Dominguez. 2011. Regulation of secondary metabolism by chromatin structure and epigenetic codes. Fungal Genet. Biol. 48:62-69.
205. Summers, W.A.T., and D.A. Court. 2010. Origami in outer membrane mimetics: correlating the first detailed images of refolded VDAC with over 20 years of biochemical data. Biochem. Cell Biol. 88:425-438.
206. Sun, J., C.M. Phillips, C.T. Anderson, W.T. Beeson, M.A. Marletta, and N.L. Glass. 2011. Expression and characterization of the Neurospora crassa endoglucanase GH5-1. Protein Expr. Purif. 75:147-154.
207. Supekova, L., F. Supek, J.E. Greer, and P.G. Schultz. 2010. A single mutation in the first transmembrane domain of yeast COX2 enables its allotopic expression. Proc. Natl. Acad. Sci. U.S.A. 107:5047-5052.
208. Takahashi, M., K. Yamashita, A. Shiozawa, A. Ichiishi, F. Fukumori, and M. Fujimura. 2010. An AP-1-like transcription factor, NAP-1, regulates expression of the glutathione S-transferase and NADH:flavin oxidoreductase genes in Neurospora crassa. Biosci. Biotechnol. Biochem. 74:746-752.
209. Takata, R., K. Tokita, S. Mori, R. Shimoda, N. Harada, H. Ichinose, S. Kaneko, K. Igarashi, M. Samejima, Y. Tsumuraya, and T. Kotake. 2010. Degradation of carbohydrate moieties of arabinogalactan-proteins by glycoside hydrolases from Neurospora crassa. Carbohydr. Res. 345:2516-2522.
210. Tamaru, H. 2010. Confining euchromatin/heterochromatin territory: jumonji crosses the line. Genes Dev. 24:1465-1478.
211. Tang, X. 2009. Computational systems biology for the biological clock of Neurospora crassa. Thesis (Ph.D.)--University of Georgia. x, 84 p.
212. Tataroglu, O., and T. Schafmeier. 2010. Of switches and hourglasses: regulation of subcellular traffic in circadian clocks by phosphorylation. EMBO Rep. 11:927-935.
213. Thon, M., Q. Al Abdallah, P. Hortschansky, D.H. Scharf, M. Eisendle, H. Haas, and A.A. Brakhage. 2010. The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes. Nucleic Acids Res. 38:1098-1113.
214. Thornton, N., D.A. Stroud, D. Milenkovic, B. Guiard, N. Pfanner, and T. Becker. 2010. Two modular forms of the mitochondrial sorting and assembly machinery are involved in biogenesis of α-helical outer membrane proteins. J. Mol. Biol. 396:540-549.
215. Tian, C., J. Li, and N.L. Glass. 2010. Exploring the bZIP transcription factor regulatory network in Neurospora crassa. Microbiology:doi:10.1099/mic.0.045468-0.
216. Tian, C.G., W.T. Beeson, A.T. Iavarone, J.P. Sun, M.A. Marletta, J.H.D. Cate, and N.L. Glass. 2009. Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc. Natl. Acad. Sci. U.S.A. 106:22157-22162.
217. Tisch, D., and M. Schmoll. 2010. Light regulation of metabolic pathways in fungi. Appl. Microbiol. Biotechnol. 85:1259-1277.
218. Tuller, T., H. Birin, M. Kupiec, and E. Ruppin. 2010. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples. J. Comput. Biol. 17:1327-1344.
219. Turner, E. 2009. Evolution of reinforced reproductive isolation barriers between sympatric populations of Neurospora crassa and N. intermedia. Thesis (Ph.D.)--University of California, Berkeley. 155 p.
220. Turner, E., D.J. Jacobson, and J.W. Taylor. 2010. Reinforced postmating reproductive isolation barriers in Neurospora, an ascomycete microfungus. J. Evol. Biol. 23:1642-1656.
221. Uchida, M., R.R. Mourino-Perez, and R.W. Roberson. 2010. Live-cell imaging of microtubule dynamics in hyphae of Neurospora crassa. Methods Mol. Biol. 638:259-268.
222. Veeramachaneni, R.J. 2010. Studies on quinic acid (qa) gene cluster in various strains of Neurospora crassa. Thesis (M.S.)--Youngstown State University. x, 86 p.
223. Verma, N., M.C. Bansal, and V. Kumar. 2010. Utilisation of waste news paper hydrolysates in growth and production system of Neurospora crassa. Int. J. Appl. Environ. Sci. 5:331–335.
224. Viegas, C., C. Alves, E. Carolino, L. Rosado, and C. Silva Santos. 2010. Prevalence of fungi in indoor air with reference to gymnasiums with swimming pools. Indoor Built Environ. 19:555-561.
225. Viegas, C., C. Veríssimo, L. Rosado, and C. Silva Santos. 2010. Air fungal contamination in two elementary schools in Lisbon, Portugal, p. 305-312. In C. A. Brebbia and J. W. S. Longhurst (ed.), Air pollution XVIII. WIT Press.
226. Villalta, C.F., D.J. Jacobson, and J.W. Taylor. 2009. Three new phylogenetic and biological Neurospora species: N. hispaniola, N. metzenbergii and N. perkinsii. Mycologia 101:777-789.
227. Vitalini, M.W., J.C. Dunlap, C. Heintzen, Y. Liu, J. Loros, and D. Bell-Pedersen. 2010. Circadian rhythms, p. 442-466. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
228. Vizcaino, J.A., J.M. Foster, and L. Martens. 2010. Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. J. Proteomics 73:2136-2146.
229. Voloshin, A.G., S. Filippovich, G.P. Bachurina, S.G. Besaeva, and S.G. Ignatov. 2010. Spectrophometric analysis of volatile compounds in microorganisms. Appl. Biochem. Microbiol. 46:303-306.
230. Wakabayashi, M., C. Ishii, S. Hatakeyama, H. Inoue, and S. Tanaka. 2010. ATM and ATR homologes of Neurospora crassa are essential for normal cell growth and maintenance of chromosome integrity. Fungal Genet. Biol. 47:809-817.
231. Walther, D.M., M.P. Bos, D. Rapaport, and J. Tommassen. 2010. The mitochondrial porin, VDAC, has retained the ability to be assembled in the bacterial outer membrane. Mol. Biol. Evol. 27:887-895.
232. Walther, D.M., and D. Rapaport. 2009. Biogenesis of mitochondrial outer membrane proteins. Biochim. Biophys. Acta-Mol. Cell Res. 1793:42-51.
233. Wideman, J.G., N.E. Go, A. Klein, E. Redmond, S.W. Lackey, T. Tao, H. Kalbacher, D. Rapaport, W. Neupert, and F.E. Nargang. 2010. Roles of the Mdm10, Tom7, Mdm12, and Mmm1 proteins in the assembly of mitochondrial outer membrane proteins in Neurospora crassa. Mol. Biol. Cell 21:1725-1736.
234. Wright, S.J. 2010. Regulation of heterotrimeric G alpha subunits in the filamentous fungus, Neurospora crassa. Thesis (Ph.D.)--University of California, Riverside. 166 p.
235. Wu, Y.L., and R.M. Brosh. 2010. Distinct roles of RECQ1 in the maintenance of genomic stability. DNA Repair 9:315-324.
236. Xiao, H., W.G. Alexander, T.M. Hammond, E.C. Boone, T.D. Perdue, P.J. Pukkila, and P.K. Shiu. 2010. QIP, a protein that converts duplex siRNA into single strands, is required for meiotic silencing by unpaired DNA. Genetics 186:119-126.
237. Xie, H., X.A. Gan, and F. Ma. 2009. Field study of thermal comfort and indoor air quality in gymnasium. J. Central South Univ. Technol. 16:48-54.
238. Xiong, L., K.K. Adhvaryu, E.U. Selker, and Y. Wang. 2010. Mapping of lysine methylation and acetylation in core histones of Neurospora crassa. Biochemistry 49:5236-5243.
239. Xu, H., J. Wang, Q. Hu, Y. Quan, H. Chen, Y. Cao, C. Li, Y. Wang, and Q. He. 2010. DCAF26, an adaptor protein of Cul4-based E3, is essential for DNA methylation in Neurospora crassa. PLoS Genet 6:9.
240. Xu, H., and Y. Wang. 2010. Construction of deletion mutants for three proteasome protein coding genes and characterization of their phenotypes in Neurospora crassa. Acta Microbiologica Sinica 50:593-600.
241. Xue, C., D.J. Ebbole, and J. Heitman. 2010. How fungi sense sugars, alcohols, and amino acids, Chap. 30. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
242. Yeadon, P.J., F.J. Bowring, and D.E. Catcheside. 2010. High density analysis of randomly selected Neurospora octads reveals conversion associated with crossovers located between cog and his-3. Fungal Genet. Biol. 47:847-854.
243. Yeadon, P.J., H. Inoue, F.J. Bowring, K. Suzuki, and D.E.A. Catcheside. 2010. DNA repair and recombination, p. 96-112. In K. A. Borkovich and D. J. Ebbole (ed.), Cellular and molecular biology of filamentous fungi.
244. Zemach, A., I.E. McDaniel, P. Silva, and D. Zilberman. 2010. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 328:916-919.
245. Zemach, A., and D. Zilberman. 2010. Evolution of eukaryotic DNA methylation and the pursuit of safer sex. Curr. Biol. 20:R780-R785.
246. Zhang, R., Z. Fan, and T. Kasuga. 2011. Expression of cellobiose dehydrogenase from Neurospora crassa in Pichia pastoris and its purification and characterization. Protein Expr. Purif. 75:63-69.
247. Zhang, Z., and J.P. Townsend. 2010. The filamentous fungal gene expression database (FFGED). Fungal Genet. Biol. 47:199-204.
248. Zhao, Y., Y. Shen, S. Yang, J. Wang, Q. Hu, Y. Wang, and Q. He. 2010. Ubiquitin ligase components Cullin4 and DDB1 are essential for DNA methylation in Neurospora crassa. J. Biol. Chem. 285:4355-4365.
249. Zingler, N., A. Solem, and A.M. Pyle. 2010. Dual roles for the Mss116 cofactor during splicing of the ai5 gamma group II intron. Nucleic Acids Res. 38:6602-6609.
250. Ziv, C., and O. Yarden. 2010. Gene silencing for functional analysis: assessing RNAi as a tool for manipulation of gene expression, p. 77-100. In A. Sharon (ed.), Molecular and Cell Biology Methods for Fungi. Springer.