FGN 51 Aspergillus bibliography

Aspergillus Bibliography

This bibliography attempts to cover genetical and biochemical publications on Aspergillus nidulans and also includes selected references to related species and topics. Entries have been checked as far as possible, but please tell me of any errors and omissions. Authors are kindly requested to send a copy of each article to the FGSC for its reprint collection.

John Clutterbuck. Institute of Biomedical and Life Sciences, Anderson College,University of Glasgow, Glasgow G11 6NU, Scotland, UK. Email: j.clutterbuck@bio.gla.ac.uk

Author index

Keyword index

1. Adams, D.J. 2004 Fungal cell wall chitinases and glucanases. Microbiology 150:2029-2035

2. Aimi, T., Taguchi, H. & Morinaga, T. 2003 Primary structure of cytochrome c gene from the white root rot fungus Rosellinia necatrix. Biosci. Biotechnol. Biochem. 67:174-178

3. Amillis, S., Cecchetto, G., Sophianopoulou, V., Koukaki, M., Scazzocchio, C. & Diallinas, G. 2004 Transcription of purine transporter genes is activated during the isotropic growth phase of Aspergillus nidulans conidia. Mol. Microbiol. 52:205-216

4. Arst, H.N.Jr. & Peñalva, M.A. 2003 Recognizing gene regulation by ambient pH. Fungal Genet. Biol. 40:1-3

5. Bañuelos, O., Naranjo, L., Casqueiro, J., Gutiérrez, S. & Martín, J.F. 2003 Co-transformation with autonomous replicating and integrative plasmids in Penicillium chrysogenum is highly efficient and leads in some cases to rescue of the intact integrative plasmid. Fungal Genet. Biol. 40;83-92

6. Baptista, F., Machado, M.F. & Castro-Prado, M.A. 2003 Alternative reproduction pathway in Aspergillus nidulans. Folia Microbiol. 48:597-604

7. Barreto-Bergter, E., Pinto, M.R. & Rodrigues, M.L. 2004 Structure and biological functions of fungal cerebrosides. An. Acad. Bras. Ciênc. 76:67-84

8. Bennion, B., Park, C., Fuller, M., Lindsey, R., Momany, M., Jennemann, R. & Levery, S.B. 2003 Glycosphingolipids of the model fungus Aspergillus nidulans: characterization of GIPCs with oligo-a-mannose-type glycans. J. Lipid Res. 44:2073-2088

9. Berthet, N., Faure, O., Bakri, A., Ambroise-Thomas, P., Grillot, R. & Brugère J.-F. 2003 In vitro susceptibility of Aspergillus spp. clinical isolates to albendazole. J. Antimicrob. Chemother. 51:1419-422

10. Boase, N.A. & Kelly, J.M. 2004 A role for creD, a carbon catabolite repression gene from Aspergillus nidulans, in ubiquitination. Mol. Microbiol. 53:929-940

11. Bok, J.W. & Keller, N.P. 2004 LaeA, a regulator of secondary metabolism in Aspergillus spp. Euk. Cell 3:527-535

12. Boyce, K.J., Hynes, M.J. & Andrianopoulos, A. 2003 Control of morphogenesis and actin localization by the Penicillium marneffei RAC homolog. J. Cell Sci. 116:1249-1260

13. Boyd, J., Gradmann, D. & Boyd, C.M. 2003 Transinhibition and voltage-gating in a fungal nitrate transporter. J. Membrane Biol. 195:109-120

14. Bruggeman, J., Debets, A.J. & Hoekstra, R.F. 2004 Selection arena in Aspergillus nidulans. Fungal Genet. Biol. 41:181-188

15. Busso, C. & Castro-Prado, M.A. 2004 Cremophor EL stimulates mitotic recombination in uvsH//uvsH diploid strain of Aspergillus nidulans. An. Acad. Bras. Ciênc. 76:49-55

16. Calvo, A.M., Bok, J., Brooks, W. & Keller, N.P. 2004 veA is required for toxin and sclerotial production in Aspergillus parasiticus. Appl. Environ. Microbiol. 70:4733-4739

17. Cánovas, D., Mukhopadhyay, R., Rosen, BP. & de Lorenzo, V. 2003 Arsenate transport and reduction in the hyper-tolerant fungus Aspergillus sp. P37. Environ. Microbiol. 5:1087-1093

18. Cecchetto, G., Amillis, S., Diallinas, G., Scazzocchio, C. & Drevet, C. 2004 The AzgA purine transporter of Aspergillus nidulans. Characterization of a protein belonging to a new phylogenetic cluster. J. Biol. Chem. 279:3132-3141

19. Chang, P.-K., Yabe, K. & Yu, J. 2004 The Aspergillus parasiticus estA-encoded esterase converts versiconal hemiacetal acetate to versiconal and versiconol acetate to versiconol in aflatoxin biosynthesis. Appl. Environ. Microbiol. 70:3593-3599

20. Chang, Y.C., Tsai, H.-F., Karos, M. & Kwon-Chung, K.J. 2004 THTA, a thermotolerance gene of Aspergillus fumigatus. Fungal Genet. Biol. 41:888-896

21. Chitarra, G.S., Abee, T., Rombouts, F.M., Posthumus, M.A. & Dijksterhuis, J. 2004 Germination of Penicillium paneum conidia is regulated by 1-octen-3-ol, a volatile self-inhibitor. Appl. Environ. Microbiol. 70:2833-2829

22. Clutterbuck, A.J. 2004 MATE transposable elements in Aspergillus nidulans: evidence of repeat-induced point mutation. Fungal Genet. Biol. 41:308-316

23. Dai, Z., Mao, X., Magnuson, J.K. & Lasure, L.L. 2004 Identification of genes associated with morphology in Aspergillus niger by using suppression subtractive hybridization. Appl. Environ. Microbiol. 70:2474-2485

24. De Souza, C.P.C., Horn, K.P., Masker, K. & Osmani, S.A. 2003 The SONB^NUP98 nucleoporin interacts with the NIMA kinase in Aspergillus nidulans. Genetics 165:1071-1081

25. do Nascimento, A.M., Goldman, M.H. & Goldman, G.H. 2002 Molecular characterization of ABC transporter-encoding genes in Aspergillus nidulans. Genet. Mol. Res. 1:337-349

26. Dotis, J. & Roilides, E. 2004 Osteomyelitis due to Aspergillus spp. in patients with chronic granulomatous disease: comparison of Aspergillus nidulans and Aspergillus fumigatus. Int. J. Infect. Dis. 8:103-110

27. Dou, X., Wu, D., An, W., Davies, J., Hashmi, S.B., Ukil, L. & Osmani, S.A. 2003 The PHOA and PHOB cyclin-dependent kinases perform an essential function in Aspergillus nidulans. Genetics 165:1105-1115

28. Dyer, P.S., Paoletti, M. & Archer, D.B. 2003 Genomics reveals sexual secrets of Aspergillus. Microbiology 149:2301-2303

29. Dynesen, J. & Nielsen, J. 2003 Surface hydrophobicity of Aspergillus nidulans conidiospores and its role in pellet formation. Biotechnol. Prog. 19:1049-1052

30. Dynesen, J. & Nielsen, J. 2003 Branching is coordinated with mitosis in growing hyphae of Aspergillus nidulans. Fungal Genet. Biol. 40:15-24

31. Efimov, V.P. 2003 Roles of NUDE and NUDF proteins of Aspergillus nidulans: insights from intracellular localization and overexpression effects. Mol. Biol. Cell 14:871-888

32. Eisendle, M., Oberegger, H., Buttinger, R., Illmer, P. & Haas, H. 2004 Biosynthesis and uptake of siderophores is controlled by a PacC-mediated ambient-pH regulatory system in Aspergillus nidulans. Euk. Cell 3:561-563

33. Eisenhaber, B., Schneider, G., Wildpaner, M. & Eisenhaber, F. 2004 A sensitive predictor for potential GPI lipid modification sites in fungal protein sequences and its application to genome-wide studies for Aspergillus nidulans, Candida albicans, Neurospora crassa, Saccharomyces cerevisiae and Schizosaccharomyces pombe. J. Mol. Biol. 337:243-253

34. Fekete, E., Karaffa, L., Sándor, E., Bányai, I., Seiboth, B., Gyémánt, G., Sepsi, A., Szentirmai, A. & Kubicek, C.P. 2004 The alternative D-galactose degrading pathway of Aspergillus nidulans proceeds via L-sorbose. Arch. Microbiol. 181:35-44

35. Fernández-Martinez, J., Brown, C.V., Díez, E., Tilburn, J., Arst, H.N.Jr., Peñalva, M.A. & Espeso, E.A. 2003 Overlap of nuclear localisation signal and specific DNA-binding residues within the zinc finger domain of PacC. J. Mol. Biol. 334:667-684

36. Fierro, F., Laich, F., García-Rico, R.O. & Martín, J.F. 2004 High efficiency transformation of Penicillium nalgiovense with integrative and autonomously replicating plasmids. Int. J. Food Microbiol. 90:237-248

37. Flipphi, M., Kocialkowska, J. & Felenbok, B. 2003 Relationships between the ethanol utilization (alc) pathway and unrelated catabolic pathways in Aspergillus nidulans. Eur. J. Biochem. 270:3555-3564

38. Fortwendel, J.R., Panepinto, J.C., Seitz, A.E., Askew, D.S. & Rhodes, J.C. 2004 Aspergillus fumigatus rasA and rasB regulate the timing and morphology of asexual development. Fungal Genet. Biol. 41:129-139

39. Gatherar, I.M., Pollerman, S., Dunn-Coleman, N. & Turner, G. 2004 Identification of a novel gene hbrB required for polarised growth in Aspergillus nidulans. Fungal Genet. Biol. 41:463-471

40. Goldman, G.H. & Kafer, E. 2004 Aspergillus nidulans as a model system to characterize the DNA damage response in eukaryotes. Fungal Genet. Biol. 41:428-442

41. Gómez, D., García, I., Scazzocchio, C. & Cubero, B. 2003 Multiple GATA sites: protein binding and physiological relevance for the regulation of the proline transporter gene of Aspergillus nidulans. Molecular Microbiology. 50:277-289

42. Grell, M.N., Mouritzen, P. & Giese, H. 2003 A Blumeria graminis gene family encoding proteins with a C-terminal variable region with homologues in pathogenic fungi. Gene 311:181-192

43. Guelfi, A., Azevedo, R.A., Lea, P.J. & Molina, S.M. 2003 Growth inhibition of the filamentous fungus Aspergillus nidulans by cadmium: an antioxidant enzyme approach. J. Gen. Appl. Microbiol. 49:63-73

44. Guest, G.M., Lin, X. & Momany, M. 2004 Aspergillus nidulans RhoA is involved in polar growth, branching and cell wall synthesis. Fungal Genet. Biol. 41:13-22

45. Haas, H. 2003 Molecular genetics of fungal siderophore biosynthesis and uptake: the role of siderophores in iron uptake and storage. Appl. Microbiol. Biotechnol. 62:316-330

46. Hallsworth, J.E., Prior, B.A., Nomura, Y., Iwahara, M. & Timmis, K.N. 2003 Compatible solutes protect against chaotrope (ethanol)-induced, nonosmotic water stress. Appl. Environ. Microbiol. 69:7032-7034

47. Han, K.-H., Seo, J.A. & Yu, J.H. 2004 A putative G-protein-coupled receptor negatively controls sexual development in Aspergillus nidulans. Mol. Microbiol. 51:1333-1345

48. Han, K.-H., Seo, J.A. & Yu, J.H. 2004 Regulators of G-protein signalling in Aspergillus nidulans: RgsA downregulates stress response and stimulates asexual sporulation through attenuation of GanB (Ga) signalling. Mol. Microbiol. 53:529-540

49. Harris, S.D. & Momany, M. 2004 Polarity in filamentous fungi: moving beyond the yeast paradigm. Fungal Genet. Biol. 41:391-400

50. Harvey, A.C. & Downs, J.A. 2004 What functions do linker histones provide? Mol. Microbiol. 53:771-775

51. Hasper, A.A., Trindade, L.M., van der Veen, D., van Ooyen, A.J.J. & de Graaff, L.H. 2004 Functional analysis of the transcriptional activator XlnR from Aspergillus niger. Microbiology 150:1367-1375

52. Hernandez-Lopez, M.J., Blasco, A., Prieto, J.A. & Randez-Gil, F. 2003 Ura^- host strains for genetic manipulation and heterologous expression of Torulaspora delbrueckii. Int. J. Food Microbiol. 86:79-86

53. Hoffmann, B., Zuo, W., Liu, A. & Morris, N.R. 2004 Retraction of: Hoffmann B, Zuo W, Liu A, Morris NR. 2001 The LIS1-related protein NUDF of Aspergillus nidulans and its interaction partner NUDE bind directly to specific subunits of dynein and dynactin and to a- and g-tubulin. J. Biol. Chem. 276:38877-38884 J. Biol. Chem. 279:820.

54. Holzbaur, E.L. 2004 Tangled NUDELs? [Comment on entry 92 below] Nature Cell Biol. 6:569-570

55. Jadoun, J., Shadkchan, Y. & Osherov, N. 2004 disruption of the Aspergillus fumigatus argB gene using a novel in vitro transposon-based mutagenesis approach. Curr. Genet. 45:235-241

56. Jaques. A.K., Fukamizo, T., Hall, D., Barton, R.C., Escott, G.M., Parkinson, T., Hitchcock, C.A. & Adams, D.J. 2003 Disruption of the gene encoding the ChiB1 chitinase of Aspergillus fumigatus and characterization of a recombinant gene product. Microbiology 149:2931-2939

57. Johnson, H., Whiteford, J.R., Eckert, S.E. & Spanu, P.D. 2003 Production and secretion of Aspergillus nidulans catalase B in filamentous fungi driven by the promoter and signal peptide of the Cladosporium fulvum hydrophobin gene hcf-1. Curr. Genet. 44:155-163

58. Joseph, J.D., Daigle, S.N. & Means, A.R. 2004 PINA is essential for growth and positively influences NIMA function in Aspergillus nidulans. J. Biol. Chem. 279:32373-32384

59. Kacprzak, M.M., Lewandowska, I., Matthews, R.G. & Paszewski, A. 2003 Transcriptional regulation of methionine synthase by homocysteine and choline in Aspergillus nidulans. Biochem. J. 376:517-524

60. Kahl, C.R. & Means, A.R. 2003 Regulation of cell cycle progression by calcium/calmodulin-dependent pathways. Endocrine Rev. 24:719-736

61. Kato, N., Brooks, W. & Calvo, A.M. 2003 The expression of sterigmatocystin and penicillin genes in Aspergillus nidulans is controlled by veA, a gene required for sexual development. Eukaryot. Cell 2:1178-1186

62. Kiso, T., Fujita, K.-I., Ping, X., Tanaka, T. & Taniguchi, M. 2004 Screening for microtubule-disrupting antifungal agents by using a mitotic-arrest mutant of Aspergillus nidulans and novel action of phenylalanine derivatives accompanying tubulin loss. Antimicrob. Agents Chemother. 48:1739-1748

63. Koch, K.V., Suelmann, R. & Fischer, R. 2003 Deletion of mdmB impairs mitochondrial distribution and morphology in Aspergillus nidulans. Cell Motil. Cytoskel. 55:114-124

64. Koukaki, M., Giannoutsou, E., Karagouni, A. & Diallinas, G. 2003 A novel improved method for Aspergillus nidulans transformation. J. Microbiol. Meth. 55:687-695

65. Krappmann, S., Bignell, E.M., Reichard, U., Rogers, T., Haynes, K. & Braus, G.H. 2004 The Aspergillus fumigatus transcriptional activator CpcA contributes significantly to the virulence of this fungal pathogen. Mol. Microbiol. 52:785-799

66. Kusumoto, K.-I., Suzuki, S. & Kashiwagi, Y. 2003 Telomeric repeat sequence of Aspergillus oryzae consists of dodeca-nucleotides. Appl. Microbiol. Biotechnol. 61:247-251

67. Lamb, H.K., Leslie, K., Dodds, A.L., Nutley, M., Cooper, A., Johnson, C., Thompson, P., Stammers, D.K. & Hawkins, A.R. 2003 The negative transcriptional regulator NmrA discriminates between oxidized and reduced dinucleotides. J. Biol. Chem. 278:32107-32114

68. Lara-Ortíz, T., Riveros-Rosas, H. & Aguirre, J. 2003 Reactive oxygen species generated by microbial NADPH oxidase NoxA regulate sexual development in Aspergillus nidulans. Mol. Microbiol. 50:1241-1255

69. Larrondo, L.F., Salas, L., Melo, F., Vicuña, R. & Cullen, D. 2003 A novel extracellular multicopper oxidase from Phanerochaete chrysosporium with ferroxidase activity. Appl. Environ. Microbiol. 69:6257-6263

70. Lee, J.I., Choi, J.H., Park, B.C., Park, Y.H., Lee, M.Y., Park, H.M. & Maeng, P.J. 2004 Differential expression of the chitin synthase genes of Aspergillus nidulans, chsA, chsB, and chsC, in response to developmental status and environmental factors. Fungal Genet. Biol. 41:635-646

71. Liebmann, B., Mühleisen, T.W., Müller, M., Hecht, M., Weidner, G., Braun, A., Brock, M. & Brakhage, A.A. 2004 Deletion of the Aspergillus fumigatus lysine biosynthesis gene lysF encoding homoaconitase leads to attenuated virulence in a low-dose mouse infection model of invasive aspergillosis. Arch. Microbiol. 181:378-383

72. Lin, X., Momany, C. & Momany, M. 2003 SwoHp, a nucleoside diphosphate kinase, is essential in Aspergillus nidulans. Eukaryot. Cell 2:1169-1177

73. Lin, X. & Momany, M. 2003 The Aspergillus nidulans swoC1 mutant shows defects in growth and development. Genetics 165:543-554

74. Mabey, J.E., Anderson, M.J., Giles, P.F., Miller, C.J., Attwood, T.K., Paton, N.W., Bornberg-Bauer, E., Robson, G.D., Oliver, S.G. & Denning. D.W. 2004 CADRE: the Central Aspergillus Data REpository. Nucleic Acids Res. 32 (Database issue) D401-405

75. MacCabe, A.P., Miró, P., Ventura, L. & Ramón, D. 2003 Glucose uptake in germinating Aspergillus nidulans conidia: involvement of the creA and sorA genes. Microbiology 149:2129-2136

76. Maurer-Stroh, S., Washietl, S. & Frank, E. 2003 Protein prenyltransferases: anchor size, pseudogenes and parasites. Biol. Chem. 384:977-989

77. Medina, M.L., Kiernan, U.A. & Francisco, W.A. 2004 Proteomic analysis of rutin-induced secreted proteins from Aspergillus flavus. Fungal Genet. Biol. 41;327-335

78. Melin, P., Schnürer, J. & Wagner, E.G. 2003 Characterization of phiA, a gene essential for phialide development in Aspergillus nidulans. Fungal Genet. Biol. 40:234-241

79. Melin, P., Schnürer, J. & Wagner, E.G. 2004 Disruption of the gene encoding the V-ATPase subunit A results in inhibition of normal growth and abolished sporulation in Aspergillus nidulans. Microbiology 150:743-748

80. Meyer, V., Mueller, D., Strowig, T. & Stahl, U. 2003 Comparison of different transformation methods for Aspergillus giganteus. Curr. Genet. 43:371-377

81. Michielse, C.B., Ram, A.F.J., Hooykaas, P.J.J. & van den Hondel, C.A.M.J.J. 2004 Role of bacterial virulence proteins in Agrobacterium-mediated transformation of Aspergillus awamori. Fungal Genet. Biol. 41:571-578

82. Michielse, C.B., Ram, A.F.J. & van den Hondel, C.A.M.J.J. 2004 The Aspergillus nidulans amdS gene as a marker for the identification of multicopy T-DNA integration events in Agrobacterium-mediated transformation of Aspergillus awamori. Curr. Genet. 45:399-403

83. Michielse, C.B., Salim, K., Ragas, P., Ram, A.F., Kudla, B., Jarry, B., Punt, P.J. & van den Hondel, C.A. 2004 Development of a system for integrative and stable transformation of the zygomycete Rhizopus oryzae by Agrobacterium-mediated DNA transfer. Mol. Gen. Genomics 271:499-510 + erratum Mol. Genet. Genomics 271:638.

84. Mizutani. O., Nojima, A., Yamamoto, M., Furukawa, K., Fujioka, T., Yamagata, Y., Abe, K. & Nakajima, T. 2004 Disordered cell integrity signaling caused by disruption of the kexB gene in Aspergillus oryzae. Eukaryot. Cell 3:1036-1048

85. Morris, N.R. & Osbourn A.E. 2004 2003 Asilomar meeting report. Fungal Genet. Biol. 41:109-114

86. Mousavi, S.A.A. & Robson, G.D. 2003 Entry into stationary phase is associated with a rapid loss of viability and an apoptotic-like phenotype in the opportunistic pathogen Aspergillus fumigatus. Fungal Genet. Biol. 39:221-229

87. Mousavi, S.A.A. & Robson, G.D. 2004 Oxidative and amphotericin B-mediated cell death in the opportunistic pathogen Aspergillus fumigatus is associated with an apoptotic-like phenotype. Microbiology 150:1937-1945

88. Mukherjee, M., Hadar, R., Mukherjee, P.K. & Horwitz, B.A. 2003 Homologous expression of a mutated beta-tubulin gene does not confer benomyl resistance on Trichoderma virens. J. Appl. Microbiol. 95:861-867

89. Mulder, H.J., Saloheimo, M., Penttilä, M. & Madrid, S.M. 2004 The transcription factor HACA mediates the unfolded protein response in Aspergillus niger, and up-regulates its own transcription. Mol. Gen. Genomics 271:130-140

90. Nahalkova, J. & Fatehi, J. 2003 Red fluorescent protein (DsRed2) as a novel reporter in Fusarium oxysporum f. sp. lycopersici. FEMS Microbiol. Lett. 225:305-309

91. Nelson, G., Kozlova-Zwinderman, O., Collis, A.J., Knight, M.R., Fincham, J.R.S., Stanger, C.P., Renwick. A., Hessing, J.G.M., Punt, P.J., van den Hondel, C.A.M.J.J. & Read, N.D. 2004 Calcium measurement in living filamentous fungi expressing codon-optimized aequorin. Mol. Microbiol. 52:1437-1450

92. Nguyen, M.D., Shu, T., Sanada, K., Larivière, R.C., Tseng, H.-C., Park, S.K., Julien, J.-P. & Tsai, L.-H. 2004 A NUDEL-dependent mechanism of neurofilament assembly regulates the integrity of CNS neurons. Nature Cell Biol. 6:595-608 [Comment on entry 54 above]

93. Nozawa, S.R., Ferreira-Nozawa, M.S., Martinez-Rossi, N.M. & Rossi, A. 2003 The pH-induced glycosylation of secreted phosphatases is mediated in Aspergillus nidulans by the regulatory gene pacC-dependent pathway. Fungal Genet. Biol. 39:286-295 + addendum: 40:287-288

94. O’Callaghan, J., Caddick, M.X. & Dobson, A.D.W. 2003 A polyketide synthase gene required for ochratoxin A biosynthesis in Aspergillus ochraceus. Microbiology 149:3485-3491

95. O'Connell, M.J., Krien, M.J. & Hunter, T. 2003 Never say never. The NIMA-related protein kinases in mitotic control. Trends Cell Biol. 13:221-228

96. Oakley, B.R. 2004 Tubulins in Aspergillus nidulans. Fungal Genet. Biol. 41:420-427

97. Oberegger, H., Eisendle, M., Schrettl, M., Graessle, S. & Haas, H. 2003 4’-phosphopantetheinyl transferase-encoding npgA is essential for siderophore biosynthesis in Aspergillus nidulans. Curr. Genet. 44:211-215

98. Obrian, G.R., Fakhoury, A.M. & Payne, G.A. 2003 identification of genes differentially expressed during aflatoxin biosynthesis in Aspergillus flavus and Aspergillus parasiticus. Fungal Genet. Biol. 39:118-127

99. Oka, M., Maruyama, J., Arioka M., Nakajima, H. & Kitamoto, K. 2004 Molecular cloning and functional characterization of avaB, a gene encoding Vam6p/Vps39p-like protein in Aspergillus nidulans. FEMS Microbiol. Lett. 232:113-121

100. Osmani, S.A. & Mirabito, P.M. 2004 The early impact of genetics on our understanding of cell cycle regulation in Aspergillus nidulans. Fungal Genet. Biol. 41:401-410

101. Ota, T., Hamaguchi, T., Sameshima, Y., Goto, M. & Furukawa, K. 2004 Molecular characterization of protein O-mannosyltransferase and its involvement in cell-wall synthesis in Aspergillus nidulans. Microbiology 150:1973-1982

102. Ovechkina, Y., Maddox, P., Oakley, C.E., Xiang, X., Osmani, S.A., Salmon, E.D. & Oakley, B.R. 2003 Spindle formation in Aspergillus is coupled to tubulin movement into the nucleus. Mol. Biol. Cell 14:2192-2200

103. Pain, A., Woodward, J., Quail, M.A., Anderson, M.J., Clark, R., Collins, M., Fosker, N., Fraser, A., Harris, D., Larke, N., Murphy, L., Humphray, S., O'Neil, S., Pertea, M., Price, C., Rabbinowitsch, E., Rajandream, M.A., Salzberg, S., Saunders, D., Seeger, K., Sharp, S., Warren, T., Denning, D.W., Barrell, B. & Hall, N. 2004 Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster. Fungal Genet. Biol. 41:443-453

104. Palmer, D.R.J., Balogh, H., Ma, G., Zhou, X., Marko, M. & Kaminsky, S.G.W..2004 Synthesis and antifungal properties of compounds which target the a-aminoadipate pathway. Pharmazie 59:93-98 + Correction: 59:336.

105. Payan, F., Leone, P., Porciero, S., Furniss, C., Tahir, T., Williamson, G., Durand, A., Manzanares, P., Gilbert, H.J., Juge, N. & Roussel, A. 2004 The dual nature of wheat xylanase protein inhibitor XIP-1. J. Biol. Chem. 279:36029-36037

106. Pellier, A.-L., Laugé, R., Veneault-Fourrey, C. & Langin, T. 2003 CLNR1, the AREA/NIT2-like global nitrogen regulator of the plant fungal pathogen Colletotrichum lindemuthianum is required for the infection cycle. Mol. Microbiol. 48:639-655

107. Pérez, P., Martínez, Ó., Romero, B., Olivas, I., Pedregosa, A.M., Palmieri, F., Laborda, F. & De Lucas, J.R. 2003 Functional analysis of mutations in the human carnitine/acylcarnitine translocase in Aspergillus nidulans. Fungal Genet. Biol. 39:211-220

108. Pitt, C.W., Moreau, E., Lunness, P.A. & Doonan, J.H. 2004 The pot1⁺ homologue in Aspergillus nidulans is required for ordering mitotic events. J. Cell Sci. 117:199-209

109. Plüddemann, A. & van Zyl, W.H. 2003 Evaluation of Aspergillus niger as host for virus-like particle production, using hepatitis B surface antigen as a model. Curr. Genet. 43:439-446

110. Plumridge, A., Hesse, S.J.A., Watson, A.J., Lowe, K.C., Stratford, M. & Archer, D.B. 2004 The weak acid preservative sorbic acid inhibits conidial germination and mycelial growth of Aspergillus niger through intracellular acidification. Appl. Environ. Microbiol. 70:3506-3511

111. Prathumpai, W., Gabelgaard, J.B., Wanchanthuek. P., van de Vondervoort, P.J., de Groot, M.J., McIntyre, M. & Nielsen, J. 2003 Metabolic control analysis of xylose catabolism in Aspergillus. Biotechnol. Prog. 19:1136-1141

112. Prathumpai, W., McIntyre, M. & Nielsen, J. 2004 The effect of CreA in glucose and xylose catabolism in Aspergillus nidulans. Appl. Microbiol. Biotechnol. 63:748-753

113. Pries, R., Bömeke, K., Draht, O., Künzler, M. & Braus, G.H. 2004 Nuclear import of yeast Gcn4p requires karyopherins Srp1p and Kap95p. Mol. Genet. Genomics 271:257-266

114. Ramírez-Coronel, M.A., Viniegra-González, G., Darvill, A. & Augur, C. 2003 A novel tannase from Aspergillus niger with b-glucosidase activity. Microbiology 149:2941-2946

115. Ramón, A.M. & Fonzi, W.A. 2003 Diverged binding specificity of Rim101p, the Candida albicans ortholog of PacC. Euk. Cell 2:718-728

116. Ray, A., Macwana, S., Ayoubi, P., Hall, L.T., Prade, R. & Mort, A.J. 2004 Negative subtraction hybridization: an efficient method to isolate large numbers of condition-specific cDNAs. BMC Genomics. 5:22.

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Authors

Abe, K. 84

Abee, T. 21

Adams, D.J. 1 56

Aguirre, J. 68

Aimi, T. 2

Alangaden, G.J. 152

Alzari, P. 117

Ambroise-Thomas, P. 9

Amillis, S. 3 18

An, W. 27

Anderson, M.J. 74 103

Andrianopoulos, A. 12

Archer, D.B. 28 110

Arioka M. 99

Arst, H.N.Jr. 4 35 142

Askew, D.S. 38

Attwood, T.K. 74

Augur, C. 114

Ayoubi, P. 116

Azevedo, R.A. 43

Bakri, A. 9

Balogh, H. 104

Bañuelos, O. 5

Bányai, I. 34

Baptista, F. 6

Barrell, B. 103

Barreto-Bergter, E. 7

Barton, R.C. 56

Baskaran, I. 152

Bax, M. 125

Beaudry, R. 123

Bennett, J.W. 159

Bennion, B. 8

Berthet, N. 9

Bhatnagar, D. 159

Bignell, E.M. 65

Bird, J. 127

Blasco, A. 52

Boase, N.A. 10

Bok, J.W. 11 16

Bömeke, K. 113

Bornberg-Bauer, E. 74

Boyce, K.J. 12

Boyd, C.M. 13

Boyd, J. 13

Brakhage, A.A. 71 147

Braun, A. 71

Braus, G.H. 65 113

Brock, M. 71

Brooks, W. 16 61

Brown, C.V. 35

Brugère J.-F. 9

Bruggeman, J. 14

Bunting, S. 154

Busso, C. 15

Buttinger, R. 32

Caddick, M.X. 94

Calvo, A.M. 16 61 123

Cánovas, D. 17

Caruso, M.L. 147

Cary, J.W. 159

Casqueiro, J. 5

Castro-Prado, M.A. 6 15

Cecchetto, G. 3 18

Chandrasekar, P.H. 152

Chang, P.K. 19 155 159

Chang, Y.C. 20

Chitarra, G.S. 21

Choi, J.H. 70

Chu, J. 138

Clark, R. 103

Cleveland, T.E. 159

Clutterbuck, A.J. 22

Coffin, M. 142

Collins, M. 103

Collis, A.J. 91

Cooper, A. 67

Crawford, N.M. 148

Cubero, B. 41

Cullen, D. 69

Dai, Z. 23

Daigle, S.N. 58

Daignan-Fornier, B. 117

Darveaux, B.A. 142

Darvill, A. 114

Davies, J. 27

de Graaff, L.H. 51

de Groot, M.J. 111

de Lorenzo, V. 17

De Lucas, J.R. 107 121

De Souza, C.P.C. 24

de Vries, R.P. 125

Debets, A.J. 14

Denning, D.W. 74 103

Diallinas, G. 3 18 64 143

Diderich, J.A. 151

Díez, E. 35

Dijksterhuis, J. 21

do Nascimento, A.M. 25

Dobrzyn, A. 155

Dobson, A.D.W. 94

Dodds, A.L. 67

Doonan, J.H. 108 128

Dotis, J. 26

Dou, X. 27

Downs, J.A. 50

Draht, O. 113

Drevet, C. 18

Dunn-Coleman, N.S. 39 136

Durand, A. 105

Dyer, P.S. 28

Dynesen, J. 30 29

Eckert, S.E. 57

Efimov, V.P. 31

Ehrlich, K.C. 159

Eisendle, M. 32 97

Eisenhaber, B. 33

Eisenhaber, F. 33

Escott, G.M. 56

Espeso, E.A. 35

Fakhoury, A.M. 98

Fatehi, J. 90

Faure, O. 9

Fekete, E. 34

Felenbok, B. 37

Fernández-Martinez, J. 35

Ferreira-Nozawa, M.S. 93

Fierro, F. 36

Fincham, J.R.S. 91

Findlay, K. 128

Fischer, R. 63 118 145 154 156

Flipphi, M. 37

Flitter, S.J. 125

Fonzi, W.A. 115

Forget, L. 131

Fortwendel, J.R. 38

Fosker, N. 103

Francisco, W.A. 77

Frank, E. 76

Fraser, A. 103

Friedrich, W. 122

Fujioka, T. 84

Fujita, K.-I. 62

Fukamizo, T. 56

Fuller, M. 8

Furniss, C. 105

Furukawa, K. 84 101

Gabelgaard, J.B. 111

Gahr, M. 122

García, I. 41

García-Rico, R.O. 36

Gatherar, I.M. 39

Gent, M.E. 136

Giannoutsou, E. 64

Giese, H. 42

Gilbert, H.J. 105

Giles, P.F. 74

Glass, A.D.M. 148

Goldman, G.H. 25 40

Goldman, M.H. 25

Gómez, D. 41

Gong, Z.Z. 157

Gorfinkiel, L. 149

Goto, M. 101

Gradmann, D. 13

Graessle, S. 97

Grell, M.N. 42

Grillot, R. 9

Guan, Y. 132

Guelfi, A. 43

Guest, G.M. 44

Gunterus, A. 123

Gutiérrez, S. 5

Gyémánt, G. 34

Haas, H. 32 45 97

Hackney, D.D. 138

Hadar, R. 88

Hahn, G. 122

Hall, D. 56

Hall, L.T. 116

Hall, N. 103

Hallsworth, J.E. 46

Hamaguchi, T. 101

Han, K.-H. 47 48

Harispe, L. 149

Harris, D. 103

Harris, S.D. 49

Harvey, A.C. 50

Hashmi, S.B. 27

Hasper, A.A. 51

Hawkins, A.R. 67

Haynes, K. 65

Hecht, M. 71

Heiniger, R.W. 142

Hererro, O. 151

Hernandez-Lopez, M.J. 52

Hesse, S.J.A. 110

Hessing, J.G.M. 91

Hicks, J.K. 134

Hitchcock, C.A. 56

Hoekstra, R.F. 14

Hoffmann, B. 53

Holzbaur, E.L. 54

Hooykaas, P.J.J. 81

Horn, K.P. 24

Horwitz, B.A. 88

Hoshino, T. 140

Hoyle, D.C. 136

Huang, T.-P. 134

Humphray, S. 103

Hunter, T. 95

Hynes, M.J. 12

Illmer, P. 32

Iwahara, M. 46

Jadoun, J. 55

Jaques. A.K. 56

Jarry, B. 83

Jennemann, R. 8

Johnson, C. 67

Johnson, H. 57

Joseph, J.D. 58

Juge, N. 105

Julien, J.-P. 92

Kacprzak, M.M. 59

Kafer, E. 40

Kahl, C.R. 60

Kall, M. 123

Kaminskyj, S.G.W. 104 133

Karaffa, L. 34

Karagouni, A. 64

Karos, M. 20

Kashiwagi, Y. 66

Kato, N. 61

Kaufmann, U. 144

Keller, N.P. 11 16 134 146 155 160

Kelly, J.M. 10

Kessler, K.E. 141

Kiernan, U.A. 77

Kinghorn, J.R. 148

Kiso, T. 62

Kitamoto, K. 99

Knight, M.R. 91

Koch, A. 122

Koch, K.V. 63

Kocialkowska, J. 37

Konzack, S. 118 145

Koukaki, M. 3 64

Kozlova-Zwinderman, O. 91

Krappmann, S. 65

Krien, M.J. 95

Kubicek, C.P. 34

Kudla, B. 83

Künzler, M. 113

Kusumoto, K.-I. 66

Kwon-Chung, K.J. 20

Labedan, B. 117

Laborda, F. 107 121

Laich, F. 36

Lamb, H.K. 67

Lang, B.F. 131

Langin, T. 106

Lara-Ortíz, T. 68

Larivière, R.C. 92

Larke, N. 103

Larrondo, L.F. 69

Lasure, L.L. 23

Laugé, R. 106

Lea, P.J. 43

Lee, J.I. 70

Lee, M.Y. 70

Leone, P. 105

Leslie, K. 67

Levery, S.B. 8

Lewandowska, I. 59

Li, Q. 141

Liebmann, B. 71

Lin, X. 44 72 73

Lindsey, R. 8

Linz, J.E. 123 124 159

Liu, A. 53

Lowe, K.C. 110

Lunness, P.A. 108

Ma, G. 104

Mabey, J.E. 74

MacCabe, A.P. 75 151

Machado, M.F. 6

Macwana, S. 116

Madan, T. 129

Maddox, P. 102

Madrid, S.M. 89

Maeng, P.J. 70

Magnuson, J.K. 23

Mahanti, N. 124

Manavathu, E.K. 152

Manzanares, P. 105

Mao, X. 23

Marko, M. 104

Martic, G. 147

Martín, J.F. 5 36

Martin, N.C. 131

Martínez, Ó. 107

Martinez-Rossi, N.M. 93

Maruyama, J. 99

Masker, K. 24

Matthews, R.G. 59

Maurer-Stroh, S. 76

May, G.S. 158

McIntyre, M. 111 112

Means, A.R. 58 60

Medina, M.L. 77

Melin, P. 78 79

Melo, F. 69

Meyer, V. 80

Michielse, C.B. 81-83

Miller, C.J. 74

Miller, M.J. 124

Mirabito, P.M. 100

Miró, P. 75

Mizutani. O. 84

Molina, S.M. 43

Momany, C. 72

Momany, M. 8 44 49 72 73

Moreau, E. 108

Morinaga, T. 2

Morris, N.R. 53 85

Mort, A.J. 116

Mouritzen, P. 42

Mousavi, S.A.A. 86 87

Mueller, D. 80

Mühleisen, T.W. 71

Mukherjee, M. 88

Mukherjee, P.K. 88

Mukhopadhyay, R. 17

Mulder, H.J. 89

Müller, M. 71

Muralidhar, K. 129

Murphy, L. 103

Nahalkova, J. 90

Nakajima, H. 99

Nakajima, T. 84

Nakamura, A. 140

Naranjo, L. 5

Nargang, C.E. 141

Nargang, F.E. 141

Nelson, G. 91

Nguyen, K. 158

Nguyen, M.D. 92

Nielsen, J. 29 30 111 112

Nojima, A. 84

Nomura, Y. 46

Nozawa, S.R. 93

Ntambi, J.M. 155

Nutley, M. 67

O'Callaghan, J. 94

O'Connell, M.J. 95

O'Neil, S. 103

Oakley, B.R. 96 102 139

Oakley, C.E. 102

Oberegger, H. 32 97

Obrian, G.R. 98

Oestreicher, N. 117

Oka, M. 99

Oka, T. 100

Olivas, I. 107 121

Oliver, S.G. 74 136

Olsson, S. 144

Osbourn A.E. 85

Osherov, N. 55

Osmani, S.A. 24 27 100 102

Ota, T. 101

Ovechkina, Y. 102

Pain, A. 103

Palmer, D.R.J. 104

Palmieri, F. 107

Panepinto, J.C. 38

Paoletti, M. 28

Park, B.C. 70

Park, C. 8

Park, H.M. 70

Park, S.K. 92

Park, Y.H. 70

Parkinson, T. 56

Paszewski, A. 59

Patel, H. 125

Paton, N.W. 74

Payan, F. 105

Payne, G.A. 98 159

Pedregosa, A.M. 107

Pellier, A.-L. 106

Peñalva, M.A. 35 4 119 120

Penttilä, M. 89 150

Pérez, P. 107

Pertea, M. 103

Ping, X. 62

Pinto, M.R. 7

Pitt, C.W. 108

Plüddemann, A. 109

Plumridge, A. 110

Pollerman, S. 39

Porciero, S. 105

Posthumus, M.A. 21

Prade, R.A. 116 136

Prathumpai, W. 111 112

Price, C. 103

Pries, R. 113

Prieto, J.A. 52

Prior, B.A. 46

Punt, P.J. 83 91

Quail, M.A. 103

Rabbinowitsch, E. 103

Ragas, P. 83

Rajandream, M.A. 103

Ram, A.F.J. 81-3

Ramírez-Coronel, M.A. 114

Ramón, A.M. 115

Ramón, D. 75

Randez-Gil, F. 52

Rath P.-M. 130

Ratrick, M. 124

Ray, A. 116

Read, N.D. 91

Reichard, U. 65

Reinke, H. 147

Renwick. A. 91

Requena, N. 154

Rhodes, J.C. 38

Ribard, C. 117

Rinzema, A. 126

Rischitor, P.E. 118 145

Riveros-Rosas, H. 68

Robson, G.D. 74 86 87 136

Rochet, M. 117

Rodrigues, M.L. 7

Rodríguez, J.M. 119 120

Roesler, J. 122

Rogers, T. 65

Roilides, E. 26

Romans, A. 158

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Romero, B. 107 121

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Suzuki, S. 66

Szentirmai, A. 34

Taguchi, H. 2

Tahir, T. 105

Takasaki, K. 140

Takaya, N. 140

Takeo, K. 140

Tanaka, T. 62

Taniguchi, M. 62

Tanton, L.L. 141

Tanzer, M.M. 142

Tavoularis. S.N. 143

Tazebay, U.H. 143

Thompson, P. 67

Thrane, C. 144

Tilburn, J. 35

Timmis, K.N. 46

Toews, M.W. 145

Trindade, L.M. 51

Tsai, H.-F. 20

Tsai, L.-H. 92

Tseng, H.-C. 92

Tsitsigiannis, D.I. 146

Tüncher, A. 147

Turner, G. 39 121 136

Ugarte, M. 119 120

Ukil, L. 27

Unkles, S.E. 148

Valdez-Taubas, J. 149

Valkonen, M. 150

van de Vondervoort, P.J. 111 125

van den Hondel, C.A.M.J.J. 81-83 91

van der Veen, D. 51

van Ooyen, A.J.J. 51

van Zyl, W.H. 109

vanKuyk, P.A. 125 151

Varanasi, N.L. 152

Vederas, J.C. 137

Veith, D. 145

Veneault-Fourrey, C. 106

Ventura, L. 75

Vicuña, R. 69

Vienken, K. 145 154

Viniegra-González, G. 114

Vinuesa, C. 145

Visser, J. 125 126 151

Wagner, E.G. 78

Wagner, E.G. 79

Walther, A. 153

Wanchanthuek. P. 111

Wang, H. 150

Wang, R. 148

Wang, Y. 148

Ward, M. 150

Warmbold, J. 145

Warren, T. 103

Washietl, S. 76

Watson, A.J. 110

Weber, R. 154

Wei, H. 145 154

Weidner, G. 71

Wendland, J. 153

Whiteford, J.R. 57

Wildpaner, M. 33

Williamson, G. 105

Wilson, R.A. 155

Woloshuk, C.P. 159

Woodward, J. 103

Wu, D. 27

Xiang, X. 102 139 156

Xu, J. 157

Xue, T. 158

Yabe, K. 19

Yamagata, Y. 84

Yamaguchi, M. 140

Yamamoto, M. 84

Yu, J. 19 159

Yu, J.H. 47 48 132

Zarnowski, R. 146 155

Zhang, Y.Q. 160

Zhou, X. 104

Zuo, W. 53

Keywords

ABC transporters 25

Acetylated FacA 140

Acriflavine resistance 10

Actin interaction 12

Adenine deaminases 117

Aequorin 91

Aflatoxin biosynthesis 11 16 19 98 123 124 134 159

Agrobacterium-mediated transformation 80-83

Albendazole 9

Aldehyde catabolism 37

Allergens 129

Alpha/beta barrel enzymes 117

Alpha-aminoadipate pathway 104

Alternative oxidase 141

Alternative reproduction 6

AMA1 sequence 5 36

Ammonia fermentation 140

Ammonium-induced redistribution 149

Amphotericin B 87

Antifungal agents 7 9 104 122

Antigen production 109

APC transporters 143

Apoptosis 86 87 144

Arabitol dehydrogenase 34

Arabitonol dehydrogenase 119

Arrestin domain 10

Arsenate transport 17

Asilomar report 85

Aspergillus data repository 74

Autoregulation 89

Bafilomycin 78 79

Benomyl resistance 88

Benzimidazoles 9

bHLH transcription factor 147

Cadmium toxicity 43

CADRE 74

Calcium 60

Calcium measurement 91

Calmodulin 60

cAMP response 124 141

Carbon regulation 10 112 124 136 142

Carnitine/acylcarnitine translocase 107

Caspases 87 144

cDNA isolation 116

Cell cycle 24 27 30 31 31 53 58 60 95 101 108 153

Cell integrity signalling 84

Cell walls 1 8 44 100

Central Aspergillus data repository 74

Cerebrosides 7

Chaotropic agents 46

Chitin synthases 70

Chitinases 1 56

Chitosanase 119

CHP domain 128

Chronic granulomatous disease 26 122

Citric acid production 23

Colony morphology 23 147

Concanamycin 79

Conidial germination 3 21 38 46 72 73 75 110 158

Conidial robustness 125

Conidiation 12 38 48 61 70 73 78 84 132 144 147 152 155

Copper oxidase 69

Cotransformation 5

Cremophor EL 15

Cross-pathway control 65 113

Cyclin-dependent kinases 27

Cytochrome C 2

Cytokinesis 153

Cytoskeleton 49 96 156

Data repository 74

Dipeptidyl aminopeptidase 28

Diploid maintenance 118 128

DNA damage response 40

Dual-color imaging 139

Dynein 31

Endocytosis 149

Erythritol accumulation 46

Essential genes 121

Esterase 19

ESTs 136

Ethanol utilization 37 140

Ethanol-induced stress 46

Ethylene 123

Expressed sequence tags 136

Expression vectors 121 145

Farnesyltransferase 28

Fatty acid biosynthesis 155

Fatty acid dioxygenase 146

Fatty acid metabolism 107

Filamentous/pellet growth 23

Flavonoid degradation 75 76

Fluorescent markers 145

Fungal genetics 85

Galactitol 34

Galactose catabolism 34

GATA sites 41

GATEWAY 145

Gellan gum 130

Gene clusters 119 159

Gene disruption 55

Genome analysis 103

Genome database 74

Germination inhibitor 21

Glucanases 1

Glucose uptake 75

Glucosidase 114

Glufosinate 142

Glycans 8

Glycerol accumulation 46

Glycosphingolipids 8

Glycosylation 93

GPI lipid anchor prediction 33

G-protein receptors 47

G-protein regulators 48

Growth measurement 104 108 142

GTPases 12

Guido Pontecorvo 135

Heterokaryon recombination 6

Hexose transporter 154

Histone H1 50

Homoaconitase 71

Hydrophobicity 29

Hydrophobins 57

Hyphal branching 30 44 79 84 133 134

Hyphal polarity 12 39 44 49 72 73

Hyphal walls 1 8 44 100

Inhibitor-enzyme interaction 105

Intracellular acidification 110

Introns 89 157

Intron insertion 2

Iron uptake 45

Karyopherins 35 113

Kinesins 118 138

Leucine catabolism 119 120

Lignocellulose degradation 69 112

Linker histones 50

Lipid anchor 76

Lovastatin biosynthesis 11 137

Lysine biosynthesis 104

Manganese regulation 23

Mannitol 125

MAP kinase 158

MATE transposons 22

Mating type 28

Medical identification 130

Membrane proteins 76

Membrane trafficking 133

Metacaspases 144

Metal response 127

Methionine biosynthase 59

Methyl transferase 11

Methylcitrate cycle 160

Methylcrotonyl-CoA carboxylase 119

Methylglutaconic aciduria 120

Methylglutaconyl-CoA hydratase/lyase 120

Microarray, phenotypic 142

Microarrays 136

Microtubules 62

Microtubules binding 138

Mitochondrial distribution 63

Mitochondrial membrane 107

Mitochondrial RNase P 131

Mitosis 102 139

Mitotic arrest 62

Mitotic recombination 15

Mitotic spindle 62 102 118 139

Monacolin N 137

Multicopy transformants 82

Multiple drug resistance 25

NADPH oxidase 68

Negative subtractive hybridization 116

Neurofilament assembly 54 55 92

Nitrate assimilation 140

Nitrate reductase 148

Nitrate uptake 13 148

Nitrogen regulation 41 57 67 106

Nitrogen sensing 158

Nitrogen sources 142

Nuclear distribution 31 54 92 156

Nuclear transport 35 51 102 113

Nucleoporin 24

Nucleoside diphosphate kinase 72

Nutritional profiling 142

Ochratoxin production 94

Octenols 21

O-mannosyltransferase 100

Osmotic stress 70

Osteomyelitis 26

Oxidative stress 87

Parameiosis 6

PARP 144

Pathogenicity 26 42 65 71 106 122

Pellet formation 29

Penicillin production 11 61

Peptidyl-prolyl isomerase 58

pH regulation 4 32 35 110 115 151

pH sensitivity 79

Phenotypic microarray 142

Phenylalanine derivatives 62

Pheromone 28

Phialide development 78 147

Phosphatases 93

Plasmid integration 64 83

Polarity 12 39 44 49 72 73

Poly(ADP-ribose) polymerase 144

Polyketide biosynthesis 94 137 160

Polyol accumulation 46 126

Pontecorvo 135

Predicting protein motifs 33

Prenyl protease 28

Prenylation 76 77

Prenylcysteine carboxymethyl transferase 28

Proline transport 143

Promoter analysis 41 124

Propionate metabolism 160

Protein excretion 93

Protein folding 150

Protein kinases 95

Protein phosphorylation 134

Protein prenylation 76

Protein production 150

Protein secretion 57

Protein tagging 145

Proteolytic processing 84

Proteomics 75

Psi factors 146

Purine transport 18 149

RAC homologue 12

Reactive oxygen species 43 68

Red fluorescent protein 90

Redox sensing 67

Regulatable promoter 121

Repeat-induced point mutation 22

Replicating plasmid 5 36 64

Ribosomal proteins 129

Ribosomal spacer 130

RIP 22

RNase P 131

Rutin-induced proteins 77

Sclerotia 16

Secondary metabolism 11

Selection arena 14

Self-sterility 14

Septation 153

Sexual reproduction 14 47 61 68 70 123 154 155

Sexual/asexual balance 146

Siderophore 32 45 97 127

Solid-state fermentation 126

Somatic selection 14

Sorbic acid 110

Sorbose 34

Spindle 62 102 118 139

Stationary phase 86

Stearic acid desaturases 155

Sterigmatocystin biosynthesis 11 61 159 132 160

Stress tolerance 48 125

Sugar transporters 151

Subtractive hybridization 23

Tannase 114

Taxonomy 2

T-DNA 81 82

Telomeres 66 108

Thermotolerance 20

Transcription factors 51

Transformation

Transformation 5 36 64 80-83

Transposable elements 22

Transposon mutagenesis 55

Transposon tagging 18

Tubulins 88 96 102

Ubiquitin ligases 10

Ubiquitination 10

Unfolded protein response 89 150

Ura-blasting 52

Vacuolar membrane 99

Vacuole 149

V-ATPase 78 79

Vesicle trafficking 49

Virulence proteins 81

Virus-like particles 109

Voltage-gated nitrate transport 13

Voriconazole 122 152

Water activity 126

Water stress 46

Xylanase inhibitor 105

Xylose catabolism 111 112

Zinc binuclear cluster 51

Zinc finger 35

Zinc sensitivity 79

Genes

Superscripts:

^e Heterologous gene expression in Aspergillus

^h Aspergillus gene expressed elsewhere

^t Transformation selective marker

A. nidulans

abcD 25

acuH 107

alc genes 37

alcA 121

alcR 37

amdS^t 82

aod-1 141

apsA 31

apyA 10 14

araA 34

arbD 119

areA 106^h 142

avaB 99

azgA 3 18

benA33 62

bimC 138

catB 57^h

chpA 128

chsA,B,C 70

cpcA 113^h

creA 75 112

creD 10

crnA 13^h

csnA 119

devR 147

dewA 29

facA 140

fluG 132

galE 34

ganB 48

gprA-I 47

hbrB 39

hlyA 120

hulA-F 10

hxtA 154

hypA 133

ivdA 119

kapA 35

kex1 28

kipB 118

laeA 11

lysF 104

mat-1,-2 28

mccA,B 119

mcsA 160

mdmB 63

metH 59

mirA-C 32

MRP1 131

mstA 151 154

mstB 154

nadA 117

nimA 58 95

nimU 108

nmrA 67

noxA 68

npgA 97

nrtA 13^h 148

nudE 31 53 54 92

nudF 31 53

pacC 32 35 93 115

phiA 78

phoA,B 27

pinA 58

pmtA 100

ppgA 28

ppoA 146

preA,B 28

prnB 41 143

ram1,2 28

rasA,B 38

rgsA-C 48 61

rhoA 44

rodA 29

sdeA,B 155

sfgA-D 132

sidA 32

sonB 24

sorA 75

ste13,14,24 28

swoC 73

swoH 72

uapA,C 3

uvsH 15

veA 61

vmaA 79

xlnB 52^h

xlnC 105

A. flavus

aflA-Y 159

A. fumigatus

argB 55

chiB1 56

cnx1,3 148

egh16H 42

laeA 11

lysF 71

matA 28

nudC 121

rasA rasB 38

rpl3 129

sakA 158

thtA 20

A. giganteus

AFP 157

A. niger

hacA 89

mpdA 125

mstA 151

niaD 148

xlnR 51

A. occhraceus

pks 94

A. oryzae

kexB 84

niaD 148

A. parasiticus

aflA-Y 159

estA 19

norR 124

veA 16

A. terreus

lovB,C^^e, lovC^^e 137

Blumeria graminis

Egh16H 42

Candida albicans

rim101 115

Colletotrichum lindemuthianu

clnr1^^e 106

Gelasinospora aod-1 141

Neurospora crassa

aod-1 141

nit-3,10 148

Penicillium funiculosum

xynC 105

Penicillium marneffei

cflB 12

Phanerochaete chrysosporium

mco1^^e 69

Saccharomyces cerevisiae

aah1 117

gnn4 113

Schizosaccharomyces pombe

dea2 117

Arabidopsis

NIA2 148

Homo sapiens

NUDEL 54,92

Organisms (see also “genes”

fungi

A. awamori 81 82 91

A. flavus 9 77 98 152

A. fumigatus 9 26 65 86 87 103 130 142

A. fumigatus 52

A. giganteus 80

A. niger 9 23 91 109 110 111 114 150 152

A. oryzae 66 126

A. parasiticus 98 123

A. terreus 9 11 130

A. ustus 130

Aspergillus sp.P37 17

Cladosporium fulvum 57^h

Fusarium oxysporum 90

Magnaporthe grisea 142

Mycosphaerella graminicola 142

Neurospora crassa 91

Penicillium chrysogenum 5

Penicillium paneum 21

Pichia pastoris 148

Rhizopus oryzae 83

Rosellinia necatrix 2

Torulaspora delbrueckii 52

Trichoderma virens 88 157

Other organims

Agrobacterium tumefaciens 80-82

Pichia pastoris 56^h

Xenopus laevis 13^h